DRSC/TRiP Functional Genomics Resources

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Protein Alignment Use1 and Use1

DIOPT Version :9

Sequence 1:NP_648289.2 Gene:Use1 / 39051 FlyBaseID:FBgn0035965 Length:250 Species:Drosophila melanogaster
Sequence 2:XP_006252917.1 Gene:Use1 / 290627 RGDID:1306660 Length:271 Species:Rattus norvegicus


Alignment Length:268 Identity:80/268 - (29%)
Similarity:134/268 - (50%) Gaps:32/268 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TKLNVNIRTLLANCEELA--KSEQNFWRLQKFIKSLDTMLAELEAMGDPQSVKRIPGYLER---- 61
            ::|.:|:..||..||.:|  |.|.:.|||:|::.:|:.||..|:......:.:.|..|..:    
  Rat    15 SRLELNLVRLLCRCESMAAEKREPDEWRLEKYVGALEDMLQALKVQASKPASEVISEYSRKVDFL 79

  Fly    62 ---LQALKISTGYADVPGSTTKTPSQSSAVSETGENALKEIRQLQNSKYHNELRKELLQDSDA-- 121
               |||.|:::.......:....|.:....::....|.|.:.....::|.:|:|.|||....:  
  Rat    80 KGMLQAEKLTSSSEKALANQFLAPGRVPTTAKERVPATKTVHLQSRARYTSEMRSELLGTESSGE 144

  Fly   122 ----LRRR------RGADESSSSSGSANVQETSGENMNQAAKYYTNAQEKITEHMLSLTRNLKEQ 176
                :|:|      |.|||..|:|           .::...:.:...|||:.|.||.|.|:||..
  Rat   145 LEADMRKRVSVKGPRPADEKQSAS-----------ELDLVLQRHQGLQEKLAEEMLGLARSLKTN 198

  Fly   177 TETANRIIRRDTEVVSRSAGMADRNINSLGKEAEKLEQHSKKAYKCWLWLMIAFVIATFIGMVLF 241
            |..|..:|::|.:.:|.|..|||:|:..|..|:|:||||::|:....||.|:..|...||.|:||
  Rat   199 TLAAQSVIKKDNQTLSHSLKMADQNLEKLKLESERLEQHAQKSVNWLLWAMLIVVCFVFISMILF 263

  Fly   242 MKIMKKKK 249
            ::||.:.|
  Rat   264 IRIMPRLK 271

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Use1NP_648289.2 Use1 5..245 CDD:286796 77/260 (30%)
Use1XP_006252917.1 Use1 17..267 CDD:286796 80/266 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166343386
Domainoid 1 1.000 119 1.000 Domainoid score I5682
eggNOG 1 0.900 - - E1_KOG2678
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H10214
Inparanoid 1 1.050 121 1.000 Inparanoid score I4671
OMA 1 1.010 - - QHG48592
OrthoDB 1 1.010 - - D1442410at2759
OrthoFinder 1 1.000 - - FOG0005428
OrthoInspector 1 1.000 - - oto97938
orthoMCL 1 0.900 - - OOG6_104533
Panther 1 1.100 - - LDO PTHR13050
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1514.770

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