DRSC/TRiP Functional Genomics Resources

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Protein Alignment Use1 and SPAC17G6.07c

DIOPT Version :9

Sequence 1:NP_648289.2 Gene:Use1 / 39051 FlyBaseID:FBgn0035965 Length:250 Species:Drosophila melanogaster
Sequence 2:NP_594254.1 Gene:SPAC17G6.07c / 2542397 PomBaseID:SPAC17G6.07c Length:222 Species:Schizosaccharomyces pombe


Alignment Length:255 Identity:62/255 - (24%)
Similarity:111/255 - (43%) Gaps:52/255 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 RTLLANCE---ELAKSE-QNFWRLQKFIKSLD---TML-----AELEAMGDPQSV-KRIPGYLER 61
            :.|::..|   :|.:.| |:...|.||.|:||   .:|     .:|:.:.:||.: |||.....|
pombe     3 KDLISRLERQFKLKRDEFQDPLELLKFEKNLDYARKLLWEEGKCQLDKVAEPQGLSKRIMDLQGR 67

  Fly    62 LQALKISTGYADVPGSTTKTPSQSSAVSETGENALKEIRQLQNSKYHNELRKELLQDSDALRRRR 126
            :..|.:                       |.|..||    ::..|..::..||:.....:::.|.
pombe    68 IYDLNV-----------------------TMEKKLK----IEEKKIKSKQEKEIAHALQSIQERE 105

  Fly   127 GADESSSSSGSANVQETSGENM-NQAAKYYTNAQEKITEHMLSLTRNLKEQTETANRIIRRDTEV 190
            ..:....|    ||:.::.:.: ||     .:.|.:|:|.:|.|...|||...:....:..|.:|
pombe   106 LRERQQMS----NVEASNAQLLTNQ-----RSMQTEISESLLHLASVLKENALSFTNALVTDNQV 161

  Fly   191 VSRSAGMADRNINSLGKEAEKLEQHSK-KAYKCWLWL-MIAFVIATFIGMVLFMKIMKKK 248
            |.|:..:.|:|.:||......::.:|| |....||.| ||..|:.:||.|:..::..|.:
pombe   162 VERTGSLLDKNAHSLRHANHGVQSYSKSKRLSFWLQLGMIIAVVVSFIVMIFILQFTKNQ 221

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Use1NP_648289.2 Use1 5..245 CDD:286796 61/250 (24%)
SPAC17G6.07cNP_594254.1 SNARE_USE1 126..184 CDD:277213 17/62 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 47 1.000 Domainoid score I3523
eggNOG 1 0.900 - - E1_KOG2678
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 49 1.000 Inparanoid score I2064
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0005428
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_104533
Panther 1 1.100 - - LDO PTHR13050
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.860

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