DRSC/TRiP Functional Genomics Resources

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Protein Alignment bol and hnrnpa3

DIOPT Version :10

Sequence 1:NP_001261614.1 Gene:bol / 39049 FlyBaseID:FBgn0011206 Length:233 Species:Drosophila melanogaster
Sequence 2:NP_001315077.1 Gene:hnrnpa3 / 751729 ZFINID:ZDB-GENE-060224-1 Length:340 Species:Danio rerio


Alignment Length:111 Identity:30/111 - (27%)
Similarity:48/111 - (43%) Gaps:14/111 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KIAAAPPPSATPGGGLETPLAAPKYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVD 67
            |.|.:...|..||..|..            .:||||||..||.|..:...|..||.:::..|:.:
Zfish    86 KRAVSREDSNKPGAHLTV------------KKIFVGGIKEDTEEYHIREYFECYGKIETIDIMEE 138

  Fly    68 RA-GVSKGYGFVTFETEQEAQRLQADGECVVLRDRKLNIAPAIKKQ 112
            |: |..:|:.||||:......::.|. :...:......:..|:.||
Zfish   139 RSTGKKRGFCFVTFDDHDTVDKIVAQ-KYHTINSHNCEVRKALPKQ 183

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bolNP_001261614.1 RRM_DAZL_BOULE 31..111 CDD:409846 22/80 (28%)
PABP-1234 <45..219 CDD:130689 16/69 (23%)
hnrnpa3NP_001315077.1 RRM1_hnRNPA_like 14..91 CDD:409992 2/4 (50%)
RRM2_hnRNPA3 104..183 CDD:409996 22/79 (28%)
HnRNPA1 292..>315 CDD:463312
Blue background indicates that the domain is not in the aligned region.

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