DRSC/TRiP Functional Genomics Resources

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Protein Alignment bol and msi1

DIOPT Version :10

Sequence 1:NP_001261614.1 Gene:bol / 39049 FlyBaseID:FBgn0011206 Length:233 Species:Drosophila melanogaster
Sequence 2:XP_012816886.1 Gene:msi1 / 496961 XenbaseID:XB-GENE-490596 Length:347 Species:Xenopus tropicalis


Alignment Length:176 Identity:42/176 - (23%)
Similarity:75/176 - (42%) Gaps:22/176 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 AAPKYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEA 86
            |.||..|. ..:|||||:|.:||..|:.:.|..:|.|....::.|: ....:|:||||||.|...
 Frog   100 AQPKMVTR-TKKIFVGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFEGEDIV 163

  Fly    87 QRLQADGEC-VVLRDRKLNIAPAIKKQPNPLQSIVATNGAVYYTTTPPAPISNIPMDQFAAAV-- 148
            :::     | :...:....:....|.||   :.:::..|:|    ...:.:....||.|...:  
 Frog   164 EKV-----CDIHFHEINNKMVECKKAQP---KEVMSPTGSV----RGRSRVMPYGMDAFMLGIGM 216

  Fly   149 --YP--PVTDFTAAGVPAIYPPSAMQYQPFYQYYSVPMNVPTIWPQ 190
              ||  ....:.:.....|.|....|: |.::....|:....:.|:
 Frog   217 LGYPGFQAATYASRSYTGIAPGYTYQF-PEFRVERTPLPGAPVLPE 261

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bolNP_001261614.1 RRM_DAZL_BOULE 31..111 CDD:409846 22/81 (27%)
PABP-1234 <45..219 CDD:130689 31/154 (20%)
msi1XP_012816886.1 RRM1_MSI1 20..96 CDD:241203
PABP-1234 <32..324 CDD:130689 42/176 (24%)
RRM2_MSI 110..183 CDD:240769 22/77 (29%)
Blue background indicates that the domain is not in the aligned region.

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