DRSC/TRiP Functional Genomics Resources

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Protein Alignment bol and Rbp6

DIOPT Version :10

Sequence 1:NP_001261614.1 Gene:bol / 39049 FlyBaseID:FBgn0011206 Length:233 Species:Drosophila melanogaster
Sequence 2:NP_001097631.1 Gene:Rbp6 / 39919 FlyBaseID:FBgn0260943 Length:499 Species:Drosophila melanogaster


Alignment Length:221 Identity:53/221 - (23%)
Similarity:84/221 - (38%) Gaps:57/221 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 AAPKYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVDR-AGVSKGYGFVTFETEQEA 86
            |.||..|. ..:|||||:|..||..|:...|..:|.::...::.|: ....:|:|||||::|...
  Fly   109 AHPKMVTR-TKKIFVGGLSAPTTLEDVKSYFEQFGPIEDAMLMFDKQTNRHRGFGFVTFQSEDVV 172

  Fly    87 QRLQADGECVV----LRDRKLNIAPAIKKQ---PNPLQSIVATNGAVY-----------YTT--T 131
            .::     |.:    :.::.:....|..|:   |..|....|...:.|           ::|  |
  Fly   173 DKV-----CEIHFHEINNKMVECKKAQPKEVMLPANLAKTRAAGRSAYGELVVWGSSHAHSTAAT 232

  Fly   132 PPAPISNIPMDQFAAAVYPPVTDFTAAGVPAIYPPSAMQYQPFYQYYSVPMNVPTIWPQNYQENH 196
            ..|....:|....|||                   |.:|.|...|.......      |..|::|
  Fly   233 SAAAAGLLPSSLAAAA-------------------SVLQQQQQQQQQQQQQQ------QQQQQHH 272

  Fly   197 SPLLHSPTSNP-----HSPHSQSHPQ 217
            ..|.|:...:|     |.||:.||.|
  Fly   273 QQLHHTHPQSPAHSHAHHPHTHSHSQ 298

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bolNP_001261614.1 RRM_DAZL_BOULE 31..111 CDD:409846 21/84 (25%)
PABP-1234 <45..219 CDD:130689 42/199 (21%)
Rbp6NP_001097631.1 RRM1_MSI 30..105 CDD:409990
RRM2_MSI 119..192 CDD:240769 20/77 (26%)
Blue background indicates that the domain is not in the aligned region.

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