DRSC/TRiP Functional Genomics Resources

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Protein Alignment bol and hnrnpa0b

DIOPT Version :10

Sequence 1:NP_001261614.1 Gene:bol / 39049 FlyBaseID:FBgn0011206 Length:233 Species:Drosophila melanogaster
Sequence 2:NP_999871.1 Gene:hnrnpa0b / 334222 ZFINID:ZDB-GENE-030131-6154 Length:314 Species:Danio rerio


Alignment Length:133 Identity:41/133 - (30%)
Similarity:59/133 - (44%) Gaps:23/133 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 AAAPPPSATPGGGLETPLAAPKYGTLIP------NRIFVGGISGDTTEADLTRVFSAYGTVKSTK 63
            |.|..|....|..:|...|..:.....|      .:|||||:..|..|.|||..||.:|.::.::
Zfish    65 AMAARPHVVDGKNVEVKRAVAREDAGRPEALAKVKKIFVGGLKDDIEEKDLTEFFSQFGMIEKSE 129

  Fly    64 IIVDR-AGVSKGYGFVTFETEQEAQRLQADGECVVLR-----DRKLNIAPAIKKQPNPLQSIVAT 122
            :|.|: .|..:|:|||.||....|.:      .|||:     ..|:.:..|:.|     |.|.|.
Zfish   130 VITDKDTGKKRGFGFVHFEDNDSADK------AVVLKFHMINGHKVEVKKALTK-----QEIQAA 183

  Fly   123 NGA 125
            .||
Zfish   184 GGA 186

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bolNP_001261614.1 RRM_DAZL_BOULE 31..111 CDD:409846 29/91 (32%)
PABP-1234 <45..219 CDD:130689 28/87 (32%)
hnrnpa0bNP_999871.1 RRM_SF 6..84 CDD:473069 5/18 (28%)
RRM_SF 100..179 CDD:473069 29/89 (33%)
HnRNPA1 263..294 CDD:463312
Blue background indicates that the domain is not in the aligned region.

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