DRSC/TRiP Functional Genomics Resources

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Protein Alignment bol and hnrnpa0a

DIOPT Version :10

Sequence 1:NP_001261614.1 Gene:bol / 39049 FlyBaseID:FBgn0011206 Length:233 Species:Drosophila melanogaster
Sequence 2:NP_997810.2 Gene:hnrnpa0a / 323529 ZFINID:ZDB-GENE-030131-2249 Length:305 Species:Danio rerio


Alignment Length:120 Identity:34/120 - (28%)
Similarity:52/120 - (43%) Gaps:18/120 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 AAAPPPSATPGGGLETPLAAPKYGTLIP------NRIFVGGISGDTTEADLTRVFSAYGTVKSTK 63
            |.:..|....|..:|...|..:.....|      .:||:||:..|..|..|...||.:|.|:..:
Zfish    67 AMSARPHILDGNNVELKRAVAREDAGKPEALAKVKKIFIGGLKDDIEEDHLRDCFSQFGAVEKAE 131

  Fly    64 IIVDR-AGVSKGYGFVTFETEQEAQRLQADGECVVLR-----DRKLNIAPAIKKQ 112
            :|.|: .|..:|:|||.||....|.:      .|||:     ..|:.:..|:.||
Zfish   132 VITDKETGKKRGFGFVYFEDNDSADK------AVVLKFHIINGHKVEVKKALTKQ 180

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bolNP_001261614.1 RRM_DAZL_BOULE 31..111 CDD:409846 27/91 (30%)
PABP-1234 <45..219 CDD:130689 23/74 (31%)
hnrnpa0aNP_997810.2 RRM1_hnRNPA0 8..86 CDD:409764 4/18 (22%)
RRM_SF 102..181 CDD:473069 28/85 (33%)
HnRNPA1 260..286 CDD:463312
Blue background indicates that the domain is not in the aligned region.

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