DRSC/TRiP Functional Genomics Resources

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Protein Alignment bol and Hnrnpa1

DIOPT Version :10

Sequence 1:NP_001261614.1 Gene:bol / 39049 FlyBaseID:FBgn0011206 Length:233 Species:Drosophila melanogaster
Sequence 2:NP_001386203.1 Gene:Hnrnpa1 / 29578 RGDID:69234 Length:373 Species:Rattus norvegicus


Alignment Length:116 Identity:33/116 - (28%)
Similarity:50/116 - (43%) Gaps:24/116 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 KIAAAPPPSATPGGGLETPLAAPKYGTLIPNRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVD 67
            |.|.:...|..||..|..            .:||||||..||.|..|...|..||.::..:|:.|
  Rat    87 KRAVSREDSQRPGAHLTV------------KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTD 139

  Fly    68 R-AGVSKGYGFVTFETEQEAQRLQADGECVVLRDRKLN-----IAPAIKKQ 112
            | :|..:|:.||||:......::      |:.:...:|     :..|:.||
  Rat   140 RGSGKKRGFAFVTFDDHDSVDKI------VIQKYHTVNGHNCEVRKALSKQ 184

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
bolNP_001261614.1 RRM_DAZL_BOULE 31..111 CDD:409846 25/85 (29%)
PABP-1234 <45..219 CDD:130689 19/74 (26%)
Hnrnpa1NP_001386203.1 RRM1_hnRNPA1 12..92 CDD:410154 2/4 (50%)
RRM2_hnRNPA3 105..184 CDD:409996 25/84 (30%)
HnRNPA1 313..345 CDD:463312
Blue background indicates that the domain is not in the aligned region.

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