DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment teq and Loxl2

DIOPT Version :9

Sequence 1:NP_648288.2 Gene:teq / 39048 FlyBaseID:FBgn0023479 Length:2792 Species:Drosophila melanogaster
Sequence 2:NP_523806.2 Gene:Loxl2 / 37485 FlyBaseID:FBgn0034660 Length:511 Species:Drosophila melanogaster


Alignment Length:510 Identity:136/510 - (26%)
Similarity:201/510 - (39%) Gaps:140/510 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly  2229 VRLSGGESPNMGRIEVKANGQWGYVCDDKFGLKDADVVCRELGFQMGAQEVRGSSFYAPPNQDFN 2293
            :||.||::...|.|||..||:||.||||::...:||:|||:|||. |.:....|.|:.|..:.| 
  Fly    61 IRLVGGDNEYEGNIEVLHNGKWGAVCDDEWDSTEADIVCRQLGFP-GMRRYTRSGFFGPARRRF- 123

  Fly  2294 YLMDEVECHGNETKLGQCAFKGWGVHNCGVDEVAGVTCKVPVMKCPNNYWLCHTSKECIPPAFVC 2358
             .||.:.|.|:|.:|..|.|:|||.::|...|.|||.|..|             ....||.|   
  Fly   124 -WMDNLFCEGHEQELVDCHFEGWGENDCEPGEAAGVVCYPP-------------ENALIPMA--- 171

  Fly  2359 DNTPDCADKSDECAAVCQAPVQ------YRLEGGRNSNEGRLEVK-HHGVWGSVCDDDFNLKSAQ 2416
              ||...|:.     :.:.|:.      .||.|||:..|||:||. ..|.|||||.|.::|..|.
  Fly   172 --TPIIRDED-----LPKYPIHSRSRLYVRLRGGRSRIEGRVEVSLDGGRWGSVCADGWSLLEAN 229

  Fly  2417 VACNSMG-----------FFGPAKIEKNIFGNSNGPIWLDQVMCFGNETSIDQCNHW--NWGEHN 2468
            |.|..:|           |||...:.:.:...|.         |:||||.:..|.|.  :.|..:
  Fly   230 VVCRQLGLGYASEAFQTDFFGGFNVSRPVLSGSE---------CYGNETELADCLHHDASQGIIS 285

  Fly  2469 C--NHTEDVALHCSAGPPPRSQRYSQTQIKGGRSLGRETTPKTYSQIGLWER--SSKAVHTPRRC 2529
            |  |.....|:.|....|.....|.:.:    ::...|..|....|..:.|.  :::|..     
  Fly   286 CHGNRQHVAAVICDYIAPDLVVDYLEIE----QTAHLEDRPMLLMQCAMEENCVANEAYQ----- 341

  Fly  2530 GIFKDDLTDEYAHREERVVR--------GNV-----AQRGRHPWQATIRTRGRGGISSHWC---- 2577
             |.:||  ..:.:|..|:::        ||.     .::.:..|              |.|    
  Fly   342 -IQRDD--PHWRYRSRRLLKFTAAAINAGNADFRPFKEKSQWEW--------------HMCHMHF 389

  Fly  2578 --------------GAVVISKRH----LLTAAHCLYGSPKGAYFVRVGDHYANIAESSEVDSFIE 2624
                          ..:.:::.|    .|..::||.|..|.......||...:| ..|:|     
  Fly   390 HSMEVFATFDIFNLRGIKVAQGHKASFCLEDSNCLPGVAKKYNCANYGDQGISI-NCSDV----- 448

  Fly  2625 NWYLHENFRKGTHMNNDIALVVLKTPLKFSDYVQPICL-PD-KNAELVEDRKCTI 2677
              ||:         |.|...|.: |.|....||..|.: |: |.||:..|....|
  Fly   449 --YLY---------NLDCQWVDV-TDLIPGTYVLKIAINPEFKVAEMNYDNNAAI 491

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
teqNP_648288.2 CBM_14 65..115 CDD:279884
ChtBD2 136..184 CDD:214696
ChtBD2 215..261 CDD:214696
ChtBD2 284..327 CDD:214696
CBM_14 521..569 CDD:279884
ChtBD2 608..654 CDD:214696
ChtBD2 709..752 CDD:214696
CBM_14 782..830 CDD:279884
ChtBD2 864..909 CDD:214696
CBM_14 942..993 CDD:279884
RCR <1051..1126 CDD:304939
RCR <1116..1210 CDD:304939
ChtBD2 1324..1369 CDD:214696
ChtBD2 1474..1518 CDD:214696
LDLa 2193..2222 CDD:238060
SR 2229..2331 CDD:214555 45/101 (45%)
SRCR 2234..2332 CDD:278931 42/97 (43%)
LDLa 2337..2370 CDD:197566 6/32 (19%)
SR 2382..2480 CDD:214555 37/113 (33%)
SRCR 2386..2480 CDD:278931 34/109 (31%)
Tryp_SPc 2546..2781 CDD:214473 33/169 (20%)
Tryp_SPc 2547..2784 CDD:238113 32/168 (19%)
Loxl2NP_523806.2 SR 61..161 CDD:214555 45/102 (44%)
SRCR 66..160 CDD:278931 42/96 (44%)
SR 193..298 CDD:214555 37/113 (33%)
SRCR 198..298 CDD:278931 34/108 (31%)
Lysyl_oxidase 303..503 CDD:279521 44/233 (19%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 1 0.950 - 0 Normalized mean entropy S6743
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D31381at7147
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.870

Return to query results.
Submit another query.