DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment teq and Ssc5d

DIOPT Version :9

Sequence 1:NP_648288.2 Gene:teq / 39048 FlyBaseID:FBgn0023479 Length:2792 Species:Drosophila melanogaster
Sequence 2:NP_001128017.1 Gene:Ssc5d / 308341 RGDID:1565772 Length:1436 Species:Rattus norvegicus


Alignment Length:822 Identity:202/822 - (24%)
Similarity:287/822 - (34%) Gaps:261/822 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  2111 DPFTEHHPNSSPHQHHHHHRHPHEHSADFHIRHPELPNPFP-----------LKNETPQHQDL-- 2162
            ||:.......||........|..:.:|... ..|...||.|           |.|..|:.:.|  
  Rat   138 DPWLALSGELSPSSEEPPITHAPQPAASSQ-NGPRKKNPRPPKQVKSTRAPVLTNGAPRQERLRL 201

  Fly  2163 -----------------------NDDWDLLPNSNAEEVTPKLATRSSFNT--------------Q 2190
                                   :|.|||   .:|.....:|....:...              .
  Rat   202 VSGPHGCAGRLEVWHGGRWGTVCDDGWDL---RDAAVACRELGCGGALAAPGGARFGPGEGPVWM 263

  Fly  2191 CDFDCGNGQCLKKEEICD------GKKNCPNGKDEA-NCPPSDYEVRLSGGESPNMGRIEVKANG 2248
            .|..||.|:    |.:.|      |:.||.:.:|.. .|......:||:.|.....||:||...|
  Rat   264 DDVGCGGGE----EALRDCPRSPWGRSNCDHTEDAGLVCTGPAPRLRLADGPHGCAGRLEVWHGG 324

  Fly  2249 QWGYVCDDKFGLKDADVVCRELGFQMGAQEVRGSSFY---APPNQDFNYLMDEVECHGNETKLGQ 2310
            :||.||||.:.|:||.|.|||||.. ||....|.:|:   |.|     .::|::.|.||||.|..
  Rat   325 RWGSVCDDAWDLRDAAVACRELGCG-GALAAPGGAFFGEGAGP-----IILDDLRCRGNETALRF 383

  Fly  2311 CAFKGWGVHNCGVDEVAGVTCK-VPVMKCPNNYWLCHTSKECIPPAFVCD--------------N 2360
            |..:.||.|:|...|.||..|. :|:            ..:..|.|...|              :
  Rat   384 CPARPWGQHDCHHREDAGAVCDGMPL------------GGDVQPTAPAVDSNRTTPRLQSTSVGH 436

  Fly  2361 TPDCADKSDECAAVCQAP--------VQYRLEGGRNSNEGRLEVKHHGVWGSVCDDDFNLKSAQV 2417
            ||..|......|:....|        .|.||..|.:...|||||.|.|.||:||||.::::.:.|
  Rat   437 TPGPAGSWPPPASPTAPPEPGPEAGSPQLRLVAGPSRCSGRLEVWHDGRWGTVCDDSWDMRDSAV 501

  Fly  2418 ACNSMGFFGPAKIE--KNIFGNSNGPIWLDQVMCFGNETSIDQCNHWNWGEHNCNHTEDVALHCS 2480
            .|..:|..||.:.:  ...||...||||||.|.|.|.|.|:.:|...:||:|||.|.|||.:.|:
  Rat   502 VCRELGCGGPRQPDPAAGRFGWGAGPIWLDDVGCVGTEASLSECPAASWGKHNCAHNEDVGVTCT 566

  Fly  2481 AGP--PPRSQRYSQTQIKGGRSLGRE----------TTPKTYSQIGLWERSSKA----------- 2522
            ..|  ...|..:|.:.:.|   |||:          |.|.......:.::::||           
  Rat   567 GTPGLDTISDPFSWSWLPG---LGRDQDAWLPGELATKPSASLTSSVLQKTTKAPGKVPKSTKKW 628

  Fly  2523 ------------------------------VHTPRRCGIFKDDLTDE-----YAHREERVVRGNV 2552
                                          ..|||...:.| .||.|     .:|..||:.    
  Rat   629 VTKNAKRPTTQPPGIPITKRPRVPGTPTSLSPTPRTSELPK-RLTAEAPRRQTSHTTERLT---- 688

  Fly  2553 AQRGRHPWQ------ATIRTRGRGGISSHWC-----------------GAVVISKRHLLTAAHCL 2594
               .|.||:      |::.|:|...::|...                 |::..|:....|....:
  Rat   689 ---PRVPWEWTSETAASLSTQGPQEVTSEATTAQTPQTSLEPFGENPEGSLESSQDPAATPTAGV 750

  Fly  2595 YGSPKGAYFVRVGDHYANIAESSEVDSFIENWYLHENFRKGTHMNNDIALVVLKTPLKFSDYVQP 2659
             ..|.|.:.||:.|.....|...||      |  |... .||                       
  Rat   751 -PVPSGPFRVRLADGPNRCAGRLEV------W--HAGL-WGT----------------------- 782

  Fly  2660 ICLPDKNAELVEDRKCTISGW----GSIKSGVSTPAQVLGSAELPI-LADHVCKQSNVYGSAMSE 2719
            :|  |.:.:|   |..|::.|    |.::..|.......|:.  || |.|..||.|....|....
  Rat   783 VC--DDSWDL---RDATVACWELGCGKVRPRVGKTHYGPGTG--PIWLDDMGCKGSETSLSDCPS 840

  Fly  2720 GMFCAGSMDESVD---ACEGDSGGPLVCSDDDGETLYGLISW 2758
            |.:...:.|...|   .|.|.:|      |||    |...:|
  Rat   841 GTWGKHNCDHEEDVVLTCTGYTG------DDD----YPSWTW 872

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
teqNP_648288.2 CBM_14 65..115 CDD:279884
ChtBD2 136..184 CDD:214696
ChtBD2 215..261 CDD:214696
ChtBD2 284..327 CDD:214696
CBM_14 521..569 CDD:279884
ChtBD2 608..654 CDD:214696
ChtBD2 709..752 CDD:214696
CBM_14 782..830 CDD:279884
ChtBD2 864..909 CDD:214696
CBM_14 942..993 CDD:279884
RCR <1051..1126 CDD:304939
RCR <1116..1210 CDD:304939
ChtBD2 1324..1369 CDD:214696
ChtBD2 1474..1518 CDD:214696
LDLa 2193..2222 CDD:238060 9/35 (26%)
SR 2229..2331 CDD:214555 44/104 (42%)
SRCR 2234..2332 CDD:278931 42/100 (42%)
LDLa 2337..2370 CDD:197566 6/46 (13%)
SR 2382..2480 CDD:214555 44/99 (44%)
SRCR 2386..2480 CDD:278931 42/95 (44%)
Tryp_SPc 2546..2781 CDD:214473 51/244 (21%)
Tryp_SPc 2547..2784 CDD:238113 50/243 (21%)
Ssc5dNP_001128017.1 SR 20..119 CDD:214555
SRCR 25..119 CDD:278931
SR 199..299 CDD:214555 17/106 (16%)
SRCR 204..299 CDD:278931 16/101 (16%)
SR 305..404 CDD:214555 44/104 (42%)
SRCR 310..404 CDD:278931 42/99 (42%)
SR 465..566 CDD:214555 44/100 (44%)
SRCR 470..566 CDD:278931 42/95 (44%)
SR 759..859 CDD:214555 30/138 (22%)
SRCR 764..859 CDD:278931 27/133 (20%)
E_Pc_C <1158..1299 CDD:284226
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 96 1.000 Domainoid score I7126
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D158600at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

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