DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Doc1 and Tbx18

DIOPT Version :9

Sequence 1:NP_648283.1 Gene:Doc1 / 39039 FlyBaseID:FBgn0028789 Length:391 Species:Drosophila melanogaster
Sequence 2:NP_076303.3 Gene:Tbx18 / 76365 MGIID:1923615 Length:613 Species:Mus musculus


Alignment Length:412 Identity:153/412 - (37%)
Similarity:210/412 - (50%) Gaps:87/412 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 PFPSMLPFNMPHQQPHMMLPSRPTLPGVEAKLENNDLWQQFHKIGTEMIITKSGRRMFPSMRVSL 96
            |.|.:       .:|...||: |..|.|:  |:..:||::||:|||||||||:||||||:|||.:
Mouse   128 PVPGL-------ARPGTPLPA-PQAPRVD--LQGAELWKRFHEIGTEMIITKAGRRMFPAMRVKI 182

  Fly    97 SGLEEEASYCVLLEMVPIGDCRYK--FSGSQWVPAGGAEPQSPQRMYLHPDSPATGAHWQSQALL 159
            |||:....|.:.:::||:.:.||:  :..|:|:.||.|:...|.|:|:||||||:|..|..|.:.
Mouse   183 SGLDPHQQYYIAMDIVPVDNKRYRYVYHSSKWMVAGNADSPVPPRVYIHPDSPASGETWMRQVIS 247

  Fly   160 FNKVKLTNNTLDSSGHIVLASMHKYQPRLHIIR---SSELTQLPWAPQ----QAFVFPETEFVAV 217
            |:|:|||||.||..|||:|.||||||||:|:||   ..:|:.:...|.    :||.||||.|..|
Mouse   248 FDKLKLTNNELDDQGHIILHSMHKYQPRVHVIRKDCGDDLSPIKPVPSGEGVKAFSFPETVFTTV 312

  Fly   218 TAYQNDRITKLKIDNNPFAKGFRESGQSRCKRKLNSSGNS---------TLESED------DGSS 267
            |||||.:||:||||.||||||||:||::|  ..|.:...|         ||..||      .|::
Mouse   313 TAYQNQQITRLKIDRNPFAKGFRDSGRNR--MGLEALVESYAFWRPSLRTLTFEDIPGIPKQGNT 375

  Fly   268 VSSCDSPQAKRQRQDFEQDSTGSVSPAYYGATHP----VANPMSPYLRHHLSYGPSGAAGLPP-- 326
            .||     |..|       .||:..|    ||||    .::..||  ..||....|....|.|  
Mouse   376 SSS-----ALLQ-------GTGNAVP----ATHPHLLSGSSCSSP--AFHLGPNTSQLCSLAPAD 422

  Fly   327 ----------------SIAAAYFGGVPPQILPMPPATYAPTVAP------VSPVASQPVGSSTPT 369
                            |:|..|     .::......|:||...|      .:|..:..:|.:...
Mouse   423 YSACARSGLALNRYSTSLAETY-----SRLTNQSSETFAPPRTPSYVSVSSNPSVNMSMGGTDGD 482

  Fly   370 TSPRPSTSTKRNSFSISAILAY 391
            |...|.||.......:|..|.|
Mouse   483 TFSCPQTSLSMQISGMSPQLQY 504

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc1NP_648283.1 TBOX 58..245 CDD:238106 104/195 (53%)
Tbx18NP_076303.3 Engrailed homology 1 repressor. /evidence=ECO:0000305|PubMed:17584735 18..28
Nuclear localization signal. /evidence=ECO:0000305|PubMed:17584735 36..40
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 37..94
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..145 6/24 (25%)
TBOX 145..340 CDD:238106 105/196 (54%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2837
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
54.940

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