DRSC/TRiP Functional Genomics Resources

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Protein Alignment Doc1 and tbx20

DIOPT Version :9

Sequence 1:NP_648283.1 Gene:Doc1 / 39039 FlyBaseID:FBgn0028789 Length:391 Species:Drosophila melanogaster
Sequence 2:NP_001030292.1 Gene:tbx20 / 619590 XenbaseID:XB-GENE-487334 Length:440 Species:Xenopus tropicalis


Alignment Length:350 Identity:138/350 - (39%)
Similarity:192/350 - (54%) Gaps:52/350 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 MLPSRPTLPG-----VEAKLENNDLWQQFHKIGTEMIITKSGRRMFPSMRVSLSGLEEEASYCVL 108
            ::|:.|.:|.     :...||..:||.:||.:|||||||||||||||::|||.||::.:|.|.||
 Frog    79 LIPTTPVIPSEEMAKISCSLETKELWDKFHDLGTEMIITKSGRRMFPTIRVSFSGVDADAKYIVL 143

  Fly   109 LEMVPIGDCRYKFS--GSQWVPAGGAEPQSPQRMYLHPDSPATGAHWQSQALLFNKVKLTNNTLD 171
            :::||:.:.||:::  .|.|:.||.|:|..|.|:|:|||||.||.....|.:.|.|||||||.||
 Frog   144 MDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHPDSPFTGEQLLKQMVSFEKVKLTNNELD 208

  Fly   172 SSGHIVLASMHKYQPRLHIIR----SSELTQLPWAPQQAFVFPETEFVAVTAYQNDRITKLKIDN 232
            ..|||:|.||||||||:|||:    ::.|..|.....:.|:|.||.|.|||||||..|||||||:
 Frog   209 QHGHIILNSMHKYQPRVHIIKKKDHTASLLNLKSEEFRTFIFQETVFTAVTAYQNQLITKLKIDS 273

  Fly   233 NPFAKGFRESGQ----------------SRCKRKLNSSGNSTLESEDDGSSVSSCDSPQAKRQRQ 281
            ||||||||:|.:                |..:..:.:.|:..:..| ||.::.|..|  |....:
 Frog   274 NPFAKGFRDSSRLTDIERESVESLIQKHSYARSPIRTYGDEDVLGE-DGQTMQSRGS--AFTTSE 335

  Fly   282 DFEQDSTGSVSPAYYGATHPVANPMSPYLRHHLSYGPSGAAGLPPSIAAAYFGGVPPQILPMPPA 346
            :....|..|.:..:.|..||          ..|:...:..|.|...|.....|.:||        
 Frog   336 NLSLSSWVSSTSGFSGFQHP----------QSLTALGTSTASLATPIPHPIQGTLPP-------- 382

  Fly   347 TYAPTVAPVSP--VASQPVGSSTPT 369
             |:....|::|  :||...||. ||
 Frog   383 -YSRLGMPITPSALASSMQGSG-PT 405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc1NP_648283.1 TBOX 58..245 CDD:238106 106/213 (50%)
tbx20NP_001030292.1 T-box 96..282 CDD:366363 104/185 (56%)
T-box 98..282 104/183 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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