DRSC/TRiP Functional Genomics Resources

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Protein Alignment Doc1 and Tbx6

DIOPT Version :9

Sequence 1:NP_648283.1 Gene:Doc1 / 39039 FlyBaseID:FBgn0028789 Length:391 Species:Drosophila melanogaster
Sequence 2:XP_038941217.1 Gene:Tbx6 / 365371 RGDID:1307716 Length:463 Species:Rattus norvegicus


Alignment Length:390 Identity:157/390 - (40%)
Similarity:212/390 - (54%) Gaps:66/390 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    30 PDPFPSMLPFNM-------PHQQPHMMLPSRPTLPGVEAKLENNDLWQQFHKIGTEMIITKSGRR 87
            |.|.| :||..:       |.:..|       :||||...|||.:||::|..:||||||||:|||
  Rat    63 PPPLP-LLPSALGPETAPPPPEALH-------SLPGVSLSLENQELWKEFSAVGTEMIITKAGRR 119

  Fly    88 MFPSMRVSLSGLEEEASYCVLLEMVPIGDCRYKFSGSQWVPAGGAEPQSPQRMYLHPDSPATGAH 152
            |||:.|||::||:.||.|..||::||:...||::.|..|.|:|.|||:.|.|:|:||||||||||
  Rat   120 MFPACRVSVTGLDPEARYLFLLDVVPVDGARYRWQGQHWEPSGKAEPRLPDRVYIHPDSPATGAH 184

  Fly   153 WQSQALLFNKVKLTNNTLDSSGHIVLASMHKYQPRLHIIRSSELTQLPWAPQQAFVFPETEFVAV 217
            |..|.:.|::|||||:|||..||::|.||||||||:|::|:::|....|....:|.||||.|::|
  Rat   185 WMRQPVSFHRVKLTNSTLDPHGHLILHSMHKYQPRIHLVRATQLCSQHWGGVASFRFPETTFISV 249

  Fly   218 TAYQNDRITKLKIDNNPFAKGFRESGQ-------SRCKRKLNSSGNSTLESEDDGS--------- 266
            |||||.|||:|||..|||||||||:|:       :|.||||.  |...:.:|..||         
  Rat   250 TAYQNPRITQLKIAANPFAKGFRENGRNCKRERDARVKRKLR--GPEPVATEACGSGGECCPGGM 312

  Fly   267 ---------------SVSS------CDSPQAKRQRQDFEQDSTGSVSPAYYGATHPVANPMS-PY 309
                           ||||      |||......| |.:.:...:...|...:..|...|.: .|
  Rat   313 GPNLRKGASPSQPVLSVSSDTPGGPCDSTLGGDIR-DSDPEPAPTPQEAASASAPPCGGPSAEAY 376

  Fly   310 LRHHLSY--GPSGAAGLPPSIAAAYFGGVPPQILPMPPATYAPTVAPVSPVASQPVGSSTPTTSP 372
            |.|..::  .||......||...|      |.  |..||.|:.....:.|........:||:.:|
  Rat   377 LLHPAAFHGAPSHLPARTPSFPEA------PD--PGRPAPYSAAFLELQPGPGSSAYQTTPSVTP 433

  Fly   373  372
              Rat   434  433

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc1NP_648283.1 TBOX 58..245 CDD:238106 110/193 (57%)
Tbx6XP_038941217.1 T-box_TBX6 91..273 CDD:410322 106/181 (59%)
PHA03247 <293..453 CDD:223021 32/150 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166335199
Domainoid 1 1.000 240 1.000 Domainoid score I2183
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 265 1.000 Inparanoid score I2978
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0003805
OrthoInspector 1 1.000 - - otm44536
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4271
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
109.890

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