DRSC/TRiP Functional Genomics Resources

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Protein Alignment Doc1 and Tbx20

DIOPT Version :9

Sequence 1:NP_648283.1 Gene:Doc1 / 39039 FlyBaseID:FBgn0028789 Length:391 Species:Drosophila melanogaster
Sequence 2:XP_006242782.1 Gene:Tbx20 / 315497 RGDID:1309396 Length:446 Species:Rattus norvegicus


Alignment Length:356 Identity:142/356 - (39%)
Similarity:197/356 - (55%) Gaps:64/356 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 MLPSRPTLPGVE-----AKLENNDLWQQFHKIGTEMIITKSGRRMFPSMRVSLSGLEEEASYCVL 108
            ::|:.|.:|..|     ..||..:||.:||::|||||||||||||||::|||.||::.||.|.||
  Rat    85 LIPTTPIIPSEEMAKIACSLETKELWDKFHELGTEMIITKSGRRMFPTIRVSFSGVDPEAKYIVL 149

  Fly   109 LEMVPIGDCRYKFS--GSQWVPAGGAEPQSPQRMYLHPDSPATGAHWQSQALLFNKVKLTNNTLD 171
            :::||:.:.||:::  .|.|:.||.|:|..|.|:|:|||||.||.....|.:.|.|||||||.||
  Rat   150 MDIVPVDNKRYRYAYHRSSWLVAGKADPPLPARLYVHPDSPFTGEQLLKQMVSFEKVKLTNNELD 214

  Fly   172 SSGHIVLASMHKYQPRLHIIR----SSELTQLPWAPQQAFVFPETEFVAVTAYQNDRITKLKIDN 232
            ..|||:|.||||||||:|||:    ::.|..|.....:.|:||||.|.|||||||..|||||||:
  Rat   215 QHGHIILNSMHKYQPRVHIIKKKDHTASLLNLKSEEFRTFIFPETVFTAVTAYQNQLITKLKIDS 279

  Fly   233 NPFAKGFRESGQ----------------SRCKRKLNSSGNSTLESEDD------GSSVSSCDSPQ 275
            ||||||||:|.:                |..:..:.:.|...:..|:.      ||:.::.|   
  Rat   280 NPFAKGFRDSSRLTDIERESVESLIQKHSYARSPIRTYGEEDVLGEESQTTPNRGSAFTTSD--- 341

  Fly   276 AKRQRQDFEQDSTGSVSPAYYGATHPVANPMSPYLRHHLSYGPSGAAGLPPSIAAAYFGGVPPQI 340
                  :....|..|.|.::.|..||  .|::       :.|.|.|:...| |.....|.:||  
  Rat   342 ------NLSLSSWVSSSSSFPGFQHP--QPLT-------ALGTSTASIATP-IPHPIQGSLPP-- 388

  Fly   341 LPMPPATYAPTVAPVSP--VASQPVGSSTPT 369
                   |:....|::|  :||...||. ||
  Rat   389 -------YSRLGMPLTPSAIASSMQGSG-PT 411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc1NP_648283.1 TBOX 58..245 CDD:238106 109/213 (51%)
Tbx20XP_006242782.1 TBOX 99..291 CDD:238106 108/191 (57%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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