DRSC/TRiP Functional Genomics Resources

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Protein Alignment Doc1 and tbx18

DIOPT Version :9

Sequence 1:NP_648283.1 Gene:Doc1 / 39039 FlyBaseID:FBgn0028789 Length:391 Species:Drosophila melanogaster
Sequence 2:XP_002933971.1 Gene:tbx18 / 100489044 XenbaseID:XB-GENE-489907 Length:578 Species:Xenopus tropicalis


Alignment Length:468 Identity:157/468 - (33%)
Similarity:224/468 - (47%) Gaps:120/468 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 QLAHEIYRQQIMQRIPDPFPSMLPFNMPHQQPHMMLPSRPTLPG----VEAKLENNDLWQQFHKI 75
            :|.|.:..........|.:..:...|.|.:.|  :.|  |.:|.    |...|:..:||::||:|
 Frog    68 ELEHSVCSILASSPCEDTYGGVKSGNGPCRSP--ITP--PAVPAQTAPVRVDLQGAELWKRFHEI 128

  Fly    76 GTEMIITKSGRRMFPSMRVSLSGLEEEASYCVLLEMVPIGDCRYK--FSGSQWVPAGGAEPQSPQ 138
            ||||||||:||||||:|||.::||:....|.:.:::||:.:.||:  :..|:|:.||.|:...|.
 Frog   129 GTEMIITKAGRRMFPAMRVKITGLDPHQQYYIAMDIVPVDNKRYRYVYHSSKWMVAGNADSPVPP 193

  Fly   139 RMYLHPDSPATGAHWQSQALLFNKVKLTNNTLDSSGHIVLASMHKYQPRLHIIR---SSELTQLP 200
            |:|:||||||:|..|..|.:.|:|:|||||.||..|||:|.||||||||:|:||   ..||:.:.
 Frog   194 RVYIHPDSPASGETWMRQVISFDKLKLTNNELDDQGHIILHSMHKYQPRVHVIRKDCGEELSPVK 258

  Fly   201 WAP----QQAFVFPETEFVAVTAYQNDRITKLKIDNNPFAKGFRESGQSRCK------------- 248
            ..|    ::||.||||.|..||||||.:||:||||.||||||||:||::|..             
 Frog   259 PIPVGEGEKAFSFPETIFTTVTAYQNQQITRLKIDRNPFAKGFRDSGRNRMGLEALVESYAFWRP 323

  Fly   249 -------------RKLNSSGNSTLESEDDGSSV----------SSCDSP---------------- 274
                         .|..|:|.|:|.|   ||..          |.|.||                
 Frog   324 SLRTLTFEDIPGIPKQGSAGASSLLS---GSGAANSHAHLLPGSPCSSPAFHIGANTSQLCGLTP 385

  Fly   275 ----QAKRQRQDFEQDS----------TGSVS--------PAYYGATHPVANPMSPYLRHHLSYG 317
                ...|......:.|          |.|.|        |:|.|.|...|..||      ::..
 Frog   386 GDYSACGRSSLALNRYSTTLAETYNRLTNSTSESFATPRTPSYVGMTSSTAMNMS------MAGN 444

  Fly   318 PSGAAGLPPSIAAAYFGGVPPQILPMPPATYAPTVAPVSPVASQPVGSS-------TP------- 368
            .:...|.|.:..:....|:.||:..:.|   :||....|  :|||..||       :|       
 Frog   445 DNETFGCPQTSLSMQISGMSPQLQYIMP---SPTSNAFS--SSQPHQSSYNAFRLHSPCALYGYN 504

  Fly   369 -TTSPRPSTSTKR 380
             :|||:.::|.::
 Frog   505 FSTSPKLASSPEK 517

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc1NP_648283.1 TBOX 58..245 CDD:238106 104/199 (52%)
tbx18XP_002933971.1 TBOX 111..307 CDD:238106 104/195 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2837
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
44.040

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