DRSC/TRiP Functional Genomics Resources

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Protein Alignment Doc1 and tbx4

DIOPT Version :9

Sequence 1:NP_648283.1 Gene:Doc1 / 39039 FlyBaseID:FBgn0028789 Length:391 Species:Drosophila melanogaster
Sequence 2:XP_002933872.1 Gene:tbx4 / 100488041 XenbaseID:XB-GENE-951382 Length:541 Species:Xenopus tropicalis


Alignment Length:401 Identity:142/401 - (35%)
Similarity:196/401 - (48%) Gaps:106/401 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 TLPGVEAKLENNDLWQQFHKIGTEMIITKSGRRMFPSMRVSLSGLEEEASYCVLLEMVPIGDCRY 119
            |:..::..|...:||::||:.||||||||:|||||||.:|.::|:..:..|.:|:::||..|.||
 Frog    52 TIENIKVYLHEKELWKKFHEAGTEMIITKAGRRMFPSYKVKVTGMNPKTKYILLIDIVPADDHRY 116

  Fly   120 KFSGSQWVPAGGAEPQSPQRMYLHPDSPATGAHWQSQALLFNKVKLTNNTLDSSGHIVLASMHKY 184
            ||..::|:.||.|||..|.|:|:|||||||||||..|.:.|.|:|||||.||..|||:|.|||||
 Frog   117 KFCDNKWMVAGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKY 181

  Fly   185 QPRLHIIRSSELTQLPWAPQQAF---VFPETEFVAVTAYQNDRITKLKIDNNPFAKGFRESGQSR 246
            ||||||:::.|.... .:...||   ||.||.|::||:|||.:||:|||:|||||||||.|..| 
 Frog   182 QPRLHIVKADENNAF-GSKNTAFCTHVFSETSFISVTSYQNHKITQLKIENNPFAKGFRGSDDS- 244

  Fly   247 CKRKLNSSGNSTLESEDDGSSVSSCDSPQAKRQRQDFEQDSTGSVSPAYYGATHP-------VAN 304
                                     |...|:.|.:::...|. |:......::||       ..|
 Frog   245 -------------------------DLRVARLQSKEYPVISK-SIMRQRLVSSHPGQLSGKSDLN 283

  Fly   305 PM---SPYLRH-------HLSYGPSGAAGLP---------------------------------- 325
            |:   ...|:|       |:.:.||.|..||                                  
 Frog   284 PLHGSHQGLQHYQYENGAHMQFAPSDAQDLPLNTFTAQRDSGLFYHCLKRREGARHLDLPCKRSY 348

  Fly   326 --PSIAAA---YFGGVPP------------QILPMPPATYAPTVAPVSPVAS-------QPVGSS 366
              ||.:.|   ||...||            ::.|..|..|:.:.|.::.|:.       .|..|.
 Frog   349 LDPSSSMADDHYFRSPPPYDQQMLSPSYRNEVTPREPCMYSTSGAEIAGVSGVEDLPPPPPPLSC 413

  Fly   367 TPTTSPRPSTS 377
            ...||..|.||
 Frog   414 NMWTSVSPYTS 424

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc1NP_648283.1 TBOX 58..245 CDD:238106 104/189 (55%)
tbx4XP_002933872.1 TBOX 55..244 CDD:238106 104/189 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 226 1.000 Inparanoid score I3405
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.060

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