DRSC/TRiP Functional Genomics Resources

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Protein Alignment Doc1 and tbx3b

DIOPT Version :9

Sequence 1:NP_648283.1 Gene:Doc1 / 39039 FlyBaseID:FBgn0028789 Length:391 Species:Drosophila melanogaster
Sequence 2:XP_002662050.2 Gene:tbx3b / 100334188 ZFINID:ZDB-GENE-060531-144 Length:594 Species:Danio rerio


Alignment Length:424 Identity:149/424 - (35%)
Similarity:214/424 - (50%) Gaps:84/424 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 PSML------PFNMPHQQPHMMLPSRPTLPGVEAKLENNDLWQQFHKIGTEMIITKSGRRMFPSM 92
            |::|      |...|..:|             ...||.|:||.||||:||||:||||||||||:.
Zfish    54 PALLSGRTRDPVQTPEDEP-------------VVHLEGNELWGQFHKVGTEMVITKSGRRMFPAF 105

  Fly    93 RVSLSGLEEEASYCVLLEMVPIGDCRYKFSGSQWVPAGGAEPQSPQRMYLHPDSPATGAHWQSQA 157
            :|..||.:.:|.|.:|:::|...|.||||...:|:.||.|:|:.|:|||:|||||:||..|.|:|
Zfish   106 KVRCSGFDRKARYILLMDIVASDDYRYKFHNCRWMVAGKADPEMPKRMYIHPDSPSTGEQWMSKA 170

  Fly   158 LLFNKVKLTNNTLDSSGHIVLASMHKYQPRLHIIRSSELTQLPWAPQQAFVFPETEFVAVTAYQN 222
            :.|:|:|||||..|..|..:|.||||||||.||:|::::.:||::..:.:|||||||:|||||||
Zfish   171 VTFHKLKLTNNISDKHGFTILNSMHKYQPRFHIVRANDVLKLPYSTFKTYVFPETEFIAVTAYQN 235

  Fly   223 DRITKLKIDNNPFAKGFRESGQSRC-KRK------------------------------------ 250
            ::||:||||||||||||||:|..|. |||                                    
Zfish   236 EKITQLKIDNNPFAKGFRETGNGRREKRKQMLHQRCEVEPKKASVLTDDSSFDQISSNYLIQESN 300

  Fly   251 -LNSSGNSTLESEDDG----------SSVSSCDSPQAK--------RQRQDFEQDSTGSVSPAYY 296
             :.|:...|.||:.||          .|:.|....:..        ::.:|...:..|..:|...
Zfish   301 VVTSTSTDTNESDIDGFGDEKESNEVESIQSISQDEQNSREISTTVQESKDDPNEEIGDRNPEIN 365

  Fly   297 G-ATHPVANPMS-PYLRHHLSYGPSGA----AGLPPSIAAAYFGGVPPQILPMP-PATYAPTVAP 354
            . ..|.|..|.. |..:.|.......|    |....|:|..::...|..|..:. |:.....:..
Zfish   366 SKKQHSVEQPAHLPLDKKHAEQQKFAADVTDASQKDSLARHFYFPTPGLINSLRLPSHVLSNLCQ 430

  Fly   355 VSPVASQPVGSSTPTTS--PRPSTSTKRNSFSIS 386
            .:.|.:.|:.:|..|.|  ||.|...:...::.|
Zfish   431 FNYVGTLPLLASEATGSWIPRRSNEGEGQGYTTS 464

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc1NP_648283.1 TBOX 58..245 CDD:238106 108/186 (58%)
tbx3bXP_002662050.2 TBOX 74..256 CDD:238106 107/181 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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