DRSC/TRiP Functional Genomics Resources

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Protein Alignment Doc1 and tbx5b

DIOPT Version :9

Sequence 1:NP_648283.1 Gene:Doc1 / 39039 FlyBaseID:FBgn0028789 Length:391 Species:Drosophila melanogaster
Sequence 2:NP_001185700.1 Gene:tbx5b / 100004161 ZFINID:ZDB-GENE-060601-2 Length:422 Species:Danio rerio


Alignment Length:357 Identity:137/357 - (38%)
Similarity:182/357 - (50%) Gaps:64/357 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 SRPTLPGVEAKLENNDLWQQFHKIGTEMIITKSGRRMFPSMRVSLSGLEEEASYCVLLEMVPIGD 116
            |:.::.|::..|...|||.:||.:.|||||||:|||||||.:|.::||..:|.|.:|::::...:
Zfish    46 SQQSMEGIKVYLHEKDLWAKFHDVTTEMIITKAGRRMFPSYKVKVTGLNPKAKYILLMDIISADE 110

  Fly   117 CRYKFSGSQWVPAGGAEPQSPQRMYLHPDSPATGAHWQSQALLFNKVKLTNNTLDSSGHIVLASM 181
            .||||:.::|..:|.|||..|.|:|:||||||:||||..|.:.|.|:|||||.||..|||:|.||
Zfish   111 HRYKFADNKWSISGKAEPAIPGRLYVHPDSPASGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSM 175

  Fly   182 HKYQPRLHIIRSSELTQLPWAPQQAFV---FPETEFVAVTAYQNDRITKLKIDNNPFAKGFRESG 243
            |||||||||:::.|.... .:...:|.   |.||.|:|||:|||..||:|||:|||||||||   
Zfish   176 HKYQPRLHIVKADERNSF-GSSNTSFCTHSFAETTFIAVTSYQNHTITQLKIENNPFAKGFR--- 236

  Fly   244 QSRCKRKLNSSGNSTLESEDDGSSVSSCDSPQAKRQ--RQDFEQDSTGSVSPAYYGATHPVANPM 306
                       ||..:|.. ..|...|.:.|...|.  ||.....|...:|.:.|..|..     
Zfish   237 -----------GNDDIELH-RMSRTPSKEYPLVPRSTARQRAAPPSPDCLSRSEYTVTQK----- 284

  Fly   307 SPYLRHHLSYGPSGAAGLPPSIAAAYFGGVPPQILPMPPATYAPTVAPVSPVASQPVG-SSTPTT 370
                       ||      |....:...|  .|.|...|:.:.||....|...|..|. ||..||
Zfish   285 -----------PS------PGFTCSDTSG--DQSLTETPSIHDPTYPLFSYQLSPDVAPSSMDTT 330

  Fly   371 SPRP------------------STSTKRNSFS 384
            ..:|                  |.||...|||
Zfish   331 QHQPCMYGGSQVGMEELRWASYSDSTTYQSFS 362

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc1NP_648283.1 TBOX 58..245 CDD:238106 100/189 (53%)
tbx5bNP_001185700.1 TBOX 52..240 CDD:238106 102/202 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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