DRSC/TRiP Functional Genomics Resources

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Protein Alignment Doc2 and tbr1a

DIOPT Version :9

Sequence 1:NP_648282.1 Gene:Doc2 / 39038 FlyBaseID:FBgn0035956 Length:469 Species:Drosophila melanogaster
Sequence 2:XP_693121.1 Gene:tbr1a / 564699 ZFINID:ZDB-GENE-060810-93 Length:585 Species:Danio rerio


Alignment Length:441 Identity:144/441 - (32%)
Similarity:205/441 - (46%) Gaps:81/441 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 TLPGV----EMTLQNDDLWKQFHQIGTEMIITKSGRRMFPSMRLSVSGLEDESNYCVLLEMVPIG 112
            :.|.|    ::.|.|..||.:||:..|||||||.||||||.:..:||||:...:|.:.::::...
Zfish   135 SFPAVSGKAQVYLCNRALWFKFHRHQTEMIITKQGRRMFPCLTFNVSGLDPAGHYNIAVDVILAD 199

  Fly   113 DCRYKFSGSQWVPAGGAEPQ-SPQRMYLHPDSPATGAHWQAQPILFNKVKLTNN---TLDNSGHI 173
            ...::|.|.:|||.|.|:.. :..|:|.|||||.|||||..|.|.|.|:|||||   :.:|:..|
Zfish   200 PNHWRFQGGKWVPCGKADTNVTGNRVYTHPDSPNTGAHWMRQEISFGKLKLTNNKGASSNNTQMI 264

  Fly   174 VLASMHKYQPRLHVIR--------TADLAQIPWAPQQAFVFAETEFVAVTAYQNDRITKLKIDNN 230
            ||.|:||||||:|||.        |:|...:     |.|.|.||:|::||||||..||:||||:|
Zfish   265 VLQSLHKYQPRVHVIEISKNEDEDTSDPDGV-----QTFTFPETQFISVTAYQNTDITQLKIDHN 324

  Fly   231 PFAKGFRETGQSRCKRKMSSSPTGEDQDQSPSLSHSQSQSESDM-------SPTKGGGETAGGTS 288
            |||||||:...::.....:...|..|...|..|..|:....|.:       |.||....|  ||.
Zfish   325 PFAKGFRDNYDTKYSMDNTDRLTPSDSPHSQLLPSSRYAMPSALFQEQFVDSYTKSCFTT--GTP 387

  Fly   289 SIGDSDGPQIKRLRSNGSACSLSSSLDDQSVPGASSLALGSPPPHLHSHSHPHPLQARSASSVFM 353
            ..|         |....|..: |:...:.||.......:.||       |.| ..:|...::..:
Zfish   388 ERG---------LEFTNSIMT-SNQTQESSVTSGQRWFVSSP-------SVP-SYEADVDTAALL 434

  Fly   354 QHFQQNMQSLLRPSLVDLACTYFGRPHEYGGAIQASPMYPPAAMLQAGLGPHPGLNLPPGVSGAD 418
            .:....:::|...|.              ||:..:...|...    ||......|.     :|:.
Zfish   435 SYTTAGVKNLPFTST--------------GGSSNSLDYYTST----AGWDSRGSLE-----NGSK 476

  Fly   419 LISDESGAEELELDVGSETSTLEQSTQEQ--PLEQPSTRSKGFSISAILGG 467
            .||:.||   ..||     :|||:|.|..  |.::.........:||.|.|
Zfish   477 TISNLSG---WVLD-----ATLERSMQPNYLPDDRELMERSSLGVSAELRG 519

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc2NP_648282.1 TBOX 55..242 CDD:238106 95/202 (47%)
tbr1aXP_693121.1 TBOX 142..335 CDD:238106 94/197 (48%)
T-box_assoc 355..550 CDD:292794 45/216 (21%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

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