DRSC/TRiP Functional Genomics Resources

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Protein Alignment Doc2 and tbx4

DIOPT Version :9

Sequence 1:NP_648282.1 Gene:Doc2 / 39038 FlyBaseID:FBgn0035956 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_570989.2 Gene:tbx4 / 30070 ZFINID:ZDB-GENE-991124-5 Length:543 Species:Danio rerio


Alignment Length:388 Identity:147/388 - (37%)
Similarity:208/388 - (53%) Gaps:46/388 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 PRVTLPGVEMTLQNDDLWKQFHQIGTEMIITKSGRRMFPSMRLSVSGLEDESNYCVLLEMVPIGD 113
            |..::..:::.|.:.:|||:||:.||||||||:|||||||.::.|:|:..::.|.:|.::||..|
Zfish    46 PDQSIENIKVVLHDRELWKKFHEAGTEMIITKAGRRMFPSYKVKVTGMNPKTKYILLTDIVPADD 110

  Fly   114 CRYKFSGSQWVPAGGAEPQSPQRMYLHPDSPATGAHWQAQPILFNKVKLTNNTLDNSGHIVLASM 178
            .||||..::|:.||.|||..|.|:|:|||||||||||..|.:.|.|:|||||.||..|||:|.||
Zfish   111 HRYKFCDNKWMVAGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSM 175

  Fly   179 HKYQPRLHVIRTADLAQIPWAPQQAF---VFAETEFVAVTAYQNDRITKLKIDNNPFAKGFR--E 238
            ||||||||::: ||......:...|:   ||.||.|::||:|||.:||:|||:|||||||||  :
Zfish   176 HKYQPRLHIVK-ADENNAFGSKNTAYCTHVFHETAFISVTSYQNHKITQLKIENNPFAKGFRGSD 239

  Fly   239 TGQSRCKRKMSSSPTGEDQDQSPSLSHSQSQSESDMSPTKGGGETAGGTSSIGDSDGPQIKRLRS 303
            .|..|..|..     |:|.   |.:|.:..:.....|.....|:.:.|..    |..||:.....
Zfish   240 EGDLRVSRLQ-----GKDY---PVISKNMVRQRLISSHGHLSGKLSAGVL----SSHPQVLSHYQ 292

  Fly   304 NGSACSLSSSLDDQSVPGASSLALGSPPPHLHSHSHPH-------------PLQARSASSVFMQH 355
            ..|...|.:| |.|.  ..|:....|..|.|..|...|             |....::|:|..:|
Zfish   293 YDSGVPLPNS-DSQE--ALSNSFTSSREPSLLYHCFKHRDNPRHLELGCKRPYLDTTSSAVSEEH 354

  Fly   356 FQQNMQSLLRPSLVD----------LACTYFGRPHEYGGAIQASPMYPPA--AMLQAGLGPHP 406
            :.::..|...|.|..          .||.|.|...|.|||:....:..|:  ..:.|.:.|:|
Zfish   355 YFRSPPSYDSPLLSHPYCNEALGSREACMYGGLEGEGGGAVGTDDLPAPSLNCNMWASVQPYP 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc2NP_648282.1 TBOX 55..242 CDD:238106 104/191 (54%)
tbx4NP_570989.2 TBOX 52..240 CDD:238106 103/188 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

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