DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Doc2 and tbx-34

DIOPT Version :9

Sequence 1:NP_648282.1 Gene:Doc2 / 39038 FlyBaseID:FBgn0035956 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_499441.1 Gene:tbx-34 / 176549 WormBaseID:WBGene00006553 Length:302 Species:Caenorhabditis elegans


Alignment Length:228 Identity:54/228 - (23%)
Similarity:95/228 - (41%) Gaps:36/228 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    56 VEMTLQNDDLWKQFHQIGTEMIITKSGRRMFPSMRLSVSGLEDESNYCVLLEMVPIGDCRYKFSG 120
            :::::.|:..:::...: .||::.:.|.:|.|..:..:|||.|...|.:.|.:....:.||.:..
 Worm     1 MQVSIVNEHKYRELEPL-NEMLVKRGGVKMIPEPKFVISGLVDNEEYVIKLRIDLADEFRYSYQN 64

  Fly   121 SQWVPAGGAEPQSPQRMYLHPD-SPATGAHWQAQPILFNKVKLTNNTLDNSGHIV-LASMHKYQP 183
            .||.|...:...|........: ...|||.|..:.:.|:|:.:|....|...::: :...|||.|
 Worm    65 QQWTPFAPSTKNSKLSAITETEHRKETGATWNMRIVQFDKLLITREFNDIQRNVIHVEPNHKYIP 129

  Fly   184 RLHVIRTADLAQIPWAPQQAFVFAETEFVAVTAYQNDRITKLKIDNNPFAKGFRETGQSRCKRKM 248
            .|      .:..:.......|.|.:.||:||.:||:.||...|                |..|||
 Worm   130 VL------TIQNVTTGKSTEFQFQQMEFIAVKSYQSARIRHTK----------------RAPRKM 172

  Fly   249 SSSPTGEDQDQ--SPSLSHSQSQSESDMSPTKG 279
            :.:|....:.|  .|.:.|         |||.|
 Worm   173 NLAPGSSQKPQLIVPDILH---------SPTYG 196

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc2NP_648282.1 TBOX 55..242 CDD:238106 42/187 (22%)
tbx-34NP_499441.1 T-box 3..166 CDD:279278 41/169 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.