DRSC/TRiP Functional Genomics Resources

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Protein Alignment Doc2 and sea-1

DIOPT Version :9

Sequence 1:NP_648282.1 Gene:Doc2 / 39038 FlyBaseID:FBgn0035956 Length:469 Species:Drosophila melanogaster
Sequence 2:NP_494611.1 Gene:sea-1 / 173710 WormBaseID:WBGene00004750 Length:376 Species:Caenorhabditis elegans


Alignment Length:266 Identity:64/266 - (24%)
Similarity:108/266 - (40%) Gaps:62/266 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    23 QQIMQRIPDPFPPMLP-------------IPMPRHVIMPPRVTL----------PGVEMTLQNDD 64
            :.:|.:|....||.:|             :|.....:...:.:|          ..|:::|.|.:
 Worm   111 RSLMMQINPSSPPSIPATSPQLPLAESENVPESSSTLKDHKFSLNTMLFNVKKNDAVKISLANQE 175

  Fly    65 LWKQFHQIGTEMIITKSGRRMFPSMRLSVSGLEDESNYCVLLEMVPIGDCRYK----FSGSQWVP 125
            .|.:||:|||||::..||||:||.:...||||:....||..:.|:|  |..||    ....|||.
 Worm   176 QWAKFHEIGTEMMVFNSGRRLFPLLAYKVSGLDPHKLYCAGVHMIP--DSAYKQEYDHDLQQWVN 238

  Fly   126 AGGAEPQSPQRMYLHPDSPATG-----------------------AHWQAQPILFNKVKLTNNTL 167
            .     .:.::....|.|...|                       |..:..|:...|.:..|  |
 Worm   239 C-----LNQKKTIFKPTSEILGRIENGFKLMSLGIDMSDVKIFNIAIRKKTPLQIEKSRKPN--L 296

  Fly   168 DNSGHIVLASMHKYQPRLHVIRTADLAQIPWAPQQAFVFAETEFVAVTAYQNDRITKLKIDNNPF 232
            |.:..:::  .:||.|.:.:...::.........|| .|.||.||.|:.|:|.:|.::|...|.:
 Worm   297 DKTIEVLI--QYKYLPVIKIYELSNSGMEKKEIAQA-TFPETSFVTVSIYRNQKIKEMKTLGNKY 358

  Fly   233 AKGFRE 238
            .:..|:
 Worm   359 CRTDRK 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc2NP_648282.1 TBOX 55..242 CDD:238106 57/211 (27%)
sea-1NP_494611.1 TBOX 167..369 CDD:214656 57/210 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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