DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Doc3 and Tbx18

DIOPT Version :9

Sequence 1:NP_648280.1 Gene:Doc3 / 39036 FlyBaseID:FBgn0035954 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_076303.3 Gene:Tbx18 / 76365 MGIID:1923615 Length:613 Species:Mus musculus


Alignment Length:447 Identity:156/447 - (34%)
Similarity:209/447 - (46%) Gaps:84/447 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 PPPPPPQPTLPGDVEAKLENNELWQQFHSIGTEMIITKCGRRMFPSMRVSLSGLEEEASYCVLLE 110
            |..|.|.|..|   ...|:..|||::||.|||||||||.||||||:|||.:|||:....|.:.::
Mouse   135 PGTPLPAPQAP---RVDLQGAELWKRFHEIGTEMIITKAGRRMFPAMRVKISGLDPHQQYYIAMD 196

  Fly   111 MVPIGDCRYK--FSGSQWVPAGGAEPQSPQRMYLHPESPATGKHWQSQALLFSKVKLTNNTLDNN 173
            :||:.:.||:  :..|:|:.||.|:...|.|:|:||:|||:|:.|..|.:.|.|:|||||.||:.
Mouse   197 IVPVDNKRYRYVYHSSKWMVAGNADSPVPPRVYIHPDSPASGETWMRQVISFDKLKLTNNELDDQ 261

  Fly   174 GHIVLASMHKYQPRLHVIRT---SDLGQIPWAPQ----QAFIFPETEFIAVTAYQNDRITKLKID 231
            |||:|.||||||||:||||.   .||..|...|.    :||.||||.|..||||||.:||:||||
Mouse   262 GHIILHSMHKYQPRVHVIRKDCGDDLSPIKPVPSGEGVKAFSFPETVFTTVTAYQNQQITRLKID 326

  Fly   232 NNPFAKGFRESGQSR---------------CKRKINDSPPPTQPEANQVDRSPVTSPLAKRLRLV 281
            .||||||||:||::|               ..|.:.....|..|:......|.:.......:   
Mouse   327 RNPFAKGFRDSGRNRMGLEALVESYAFWRPSLRTLTFEDIPGIPKQGNTSSSALLQGTGNAV--- 388

  Fly   282 EEFPQHHHH---------QSHHSVPMQRHYLLDALEANFYVPAPPPPAI-EYARHIGGAY----- 331
               |..|.|         .:.|..| ....|.....|::...|....|: .|:..:...|     
Mouse   389 ---PATHPHLLSGSSCSSPAFHLGP-NTSQLCSLAPADYSACARSGLALNRYSTSLAETYSRLTN 449

  Fly   332 -PSWAYTPPSPASSVSSSSAGSTSGESAADREADADADTF--------VDVVGTAP----AAPPP 383
             .|..:.||...|.||.||..|.:.....     .|.|||        :.:.|.:|    ..|.|
Mouse   450 QSSETFAPPRTPSYVSVSSNPSVNMSMGG-----TDGDTFSCPQTSLSMQISGMSPQLQYIMPSP 509

  Fly   384 PSPPVPATATAPAS-----------------SSSDPTMAKPKRSSFSISDILGTSSS 423
            ......|..|..:|                 |:|....|.|::...|....||:|.|
Mouse   510 SGNAFAANQTHQSSYNTFRLHSPCALYGYNFSTSPKLAASPEKIVSSQGSFLGSSPS 566

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc3NP_648280.1 TBOX 58..245 CDD:238106 106/195 (54%)
Tbx18NP_076303.3 Engrailed homology 1 repressor. /evidence=ECO:0000305|PubMed:17584735 18..28
Nuclear localization signal. /evidence=ECO:0000305|PubMed:17584735 36..40
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 37..94
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 114..145 4/9 (44%)
TBOX 145..340 CDD:238106 107/197 (54%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

Return to query results.
Submit another query.