DRSC/TRiP Functional Genomics Resources

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Protein Alignment Doc3 and tbr1a

DIOPT Version :9

Sequence 1:NP_648280.1 Gene:Doc3 / 39036 FlyBaseID:FBgn0035954 Length:424 Species:Drosophila melanogaster
Sequence 2:XP_693121.1 Gene:tbr1a / 564699 ZFINID:ZDB-GENE-060810-93 Length:585 Species:Danio rerio


Alignment Length:434 Identity:140/434 - (32%)
Similarity:203/434 - (46%) Gaps:93/434 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 LLPNFAGHFMPPPPP-------------PQ--------------PTLPGDVEAKLENNELWQQFH 73
            ::|..:||:|.|.|.             ||              |.:.|..:..|.|..||.:||
Zfish    93 VVPALSGHYMSPQPVISSGLYSGMSYSYPQPYEQTYANAAVYSFPAVSGKAQVYLCNRALWFKFH 157

  Fly    74 SIGTEMIITKCGRRMFPSMRVSLSGLEEEASYCVLLEMVPIGDCRYKFSGSQWVPAGGAEPQ-SP 137
            ...|||||||.||||||.:..::|||:....|.:.::::......::|.|.:|||.|.|:.. :.
Zfish   158 RHQTEMIITKQGRRMFPCLTFNVSGLDPAGHYNIAVDVILADPNHWRFQGGKWVPCGKADTNVTG 222

  Fly   138 QRMYLHPESPATGKHWQSQALLFSKVKLTNN---TLDNNGHIVLASMHKYQPRLHVIR------- 192
            .|:|.||:||.||.||..|.:.|.|:|||||   :.:|...|||.|:||||||:|||.       
Zfish   223 NRVYTHPDSPNTGAHWMRQEISFGKLKLTNNKGASSNNTQMIVLQSLHKYQPRVHVIEISKNEDE 287

  Fly   193 -TSDLGQIPWAPQQAFIFPETEFIAVTAYQNDRITKLKIDNNPFAKGFRESGQSRCKRKINDSPP 256
             |||...:     |.|.||||:||:||||||..||:||||:||||||||::..            
Zfish   288 DTSDPDGV-----QTFTFPETQFISVTAYQNTDITQLKIDHNPFAKGFRDNYD------------ 335

  Fly   257 PTQPEANQVDR-SPVTSPLAKRLRLVEEFPQHHHHQSHHSVP--MQRHYLLDALEANFYVPAPPP 318
             |:...:..|| :|..||.::.|           ..|.:::|  :.:...:|:...:.:....|.
Zfish   336 -TKYSMDNTDRLTPSDSPHSQLL-----------PSSRYAMPSALFQEQFVDSYTKSCFTTGTPE 388

  Fly   319 PAIEYARHIGGAYPSWAYTPPSPASSVSSSSAGSTSGESAADREADADADTFVDVVGTAPAAPPP 383
            ..:|:...|       ..:..:..|||:|......|..|....|||.|....:... ||..    
Zfish   389 RGLEFTNSI-------MTSNQTQESSVTSGQRWFVSSPSVPSYEADVDTAALLSYT-TAGV---- 441

  Fly   384 PSPPVPATATAPASSSSD---PTMAKPKRSSF-----SISDILG 419
              ..:|.|:|..:|:|.|   .|.....|.|.     :||::.|
Zfish   442 --KNLPFTSTGGSSNSLDYYTSTAGWDSRGSLENGSKTISNLSG 483

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc3NP_648280.1 TBOX 58..245 CDD:238106 93/198 (47%)
tbr1aXP_693121.1 TBOX 142..335 CDD:238106 93/197 (47%)
T-box_assoc 355..550 CDD:292794 31/154 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.910

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