DRSC/TRiP Functional Genomics Resources

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Protein Alignment Doc3 and Mga

DIOPT Version :9

Sequence 1:NP_648280.1 Gene:Doc3 / 39036 FlyBaseID:FBgn0035954 Length:424 Species:Drosophila melanogaster
Sequence 2:XP_006234859.1 Gene:Mga / 499874 RGDID:1561597 Length:3093 Species:Rattus norvegicus


Alignment Length:414 Identity:127/414 - (30%)
Similarity:188/414 - (45%) Gaps:81/414 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 PQPTLPGDVEAKLENNELWQQFHSIGTEMIITKCGRRMFPSMRVSLSGLEEEASYCVLLEMVPIG 115
            |.....|.:...|:||.:|.:||:..||||:||.||||||..|..::||:....|.:::::.|:.
  Rat    67 PADCTVGKITVTLDNNSMWNEFHNRSTEMILTKQGRRMFPYCRYWITGLDSNLKYILVMDISPVD 131

  Fly   116 DCRYKFSGSQWVPAGGAEPQSPQRMYLHPESPATGKHWQSQALLFSKVKLTNNTLDNNGHIVLAS 180
            ..|||::|..|.|:|.|||....|:::|||||:||.:|..|.:.|.|:||||||||..|||:|.|
  Rat   132 SHRYKWNGRWWEPSGKAEPHILGRVFIHPESPSTGHYWMHQPVSFYKLKLTNNTLDQEGHIILHS 196

  Fly   181 MHKYQPRLHVI---RTSDLGQIPWAPQQAFIFPETEFIAVTAYQNDRITKLKIDNNPFAKGFRES 242
            ||:|.||||::   :.:::.|:.......|.||:|||.|||||||.:||:||||.||||||||:.
  Rat   197 MHRYLPRLHLVPAEKATEVIQLNGPGVHTFTFPQTEFFAVTAYQNIQITQLKIDYNPFAKGFRDD 261

  Fly   243 GQSRCKRKINDSPPPTQPEANQVDRSPVTSPLAKRLRLVE------------------------- 282
            |.|...::.......:..|.|.|..||     ..|:||.|                         
  Rat   262 GLSSKPQRDGKQRNSSDQEGNSVSSSP-----GHRVRLTEGEGSEIHSGDFDPVLRGHETSSLGL 321

  Fly   283 ---------EFPQHHHHQSHHSVPMQRHYL----LDALEANFYVPAPPPPAIEYARHIGGAYPSW 334
                     :|....:..|.|.||..:..:    :.:.|.|..:.:|..|        .|.:.  
  Rat   322 EKAPNNVKQDFLGFMNTDSTHEVPQLKREISESHVSSFEENSQISSPLNP--------NGNFN-- 376

  Fly   335 AYTPPSPASSVSSSSAGSTSGESAADREADADADTFVDVVGTAPAAPPPPSPPVPATATAPASSS 399
            ......|.............|.:....|.|.:.|.:                         ::|.
  Rat   377 VVIKEEPLDDYDYELGECPEGITVKQEETDEETDVY-------------------------SNSD 416

  Fly   400 SDPTMAKPKRSSFSISDILGTSSS 423
            .||.:.|..:....:.::....||
  Rat   417 DDPILEKQLKRHNKVDNLEADHSS 440

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc3NP_648280.1 TBOX 58..245 CDD:238106 94/189 (50%)
MgaXP_006234859.1 T-box_MGA-like 75..260 CDD:410321 92/184 (50%)
DUF4801 1040..1081 CDD:406462
Herpes_BLLF1 <1519..1828 CDD:282904
Atrophin-1 1692..>2024 CDD:397323
bHLHzip_MGA 2454..2518 CDD:381481
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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