DRSC/TRiP Functional Genomics Resources

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Protein Alignment Doc3 and mid

DIOPT Version :10

Sequence 1:NP_648280.1 Gene:Doc3 / 39036 FlyBaseID:FBgn0035954 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_608927.2 Gene:mid / 33770 FlyBaseID:FBgn0261963 Length:580 Species:Drosophila melanogaster


Alignment Length:430 Identity:156/430 - (36%)
Similarity:217/430 - (50%) Gaps:75/430 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 CGLLPNFAG------HFMPPPPPPQPTLPGD--------VEAKLENNELWQQFHSIGTEMIITKC 84
            |...|...|      ...|.|....|.:.|.        |:..||..|||.:||.:||||||||.
  Fly   147 CSTPPQSPGTEDSEERLTPEPVQKAPKIVGSCNCDDLKPVQCHLETKELWDRFHDLGTEMIITKT 211

  Fly    85 GRRMFPSMRVSLSG----LEEEASYCVLLEMVPIGDCRYKFS--GSQWVPAGGAEPQSPQRMYLH 143
            ||||||::|||.||    ::....|.||::::|:...||:::  .|.|:.||.|:|..|.|:|.|
  Fly   212 GRRMFPTVRVSFSGPLRQIQPADRYAVLMDIIPMDSKRYRYAYHRSAWLVAGKADPAPPARLYAH 276

  Fly   144 PESPATGKHWQSQALLFSKVKLTNNTLDNNGHIVLASMHKYQPRLHVIRTSDLGQIPWAPQQ--- 205
            |:||.:.:..:.|.:.|.|||||||.:|.||.|||.|||:||||:|::|.|....||..|::   
  Fly   277 PDSPFSCEALRKQVISFEKVKLTNNEMDKNGQIVLNSMHRYQPRIHLVRLSHGQSIPSNPKELQD 341

  Fly   206 ----AFIFPETEFIAVTAYQNDRITKLKIDNNPFAKGFRESGQSRCKRKINDSPPPTQPEANQVD 266
                .::||||.|.|||||||..|||||||:||||||||:|.    :....|..|.......|..
  Fly   342 LDHKTYVFPETVFTAVTAYQNQLITKLKIDSNPFAKGFRDSS----RLTDFDRDPMEALLLEQQL 402

  Fly   267 RSPV---TSPLAKR---------LRLVEEFPQHHH----HQSHHSVPMQRHYLLDALEANFYVPA 315
            |||:   ..||.::         :.|.|:..||..    :..:..:.|.:.|...|..|.   |.
  Fly   403 RSPLRLFPDPLMQQFAAQGDPSSMALFEKARQHLQMFGGNSPYAQLMMPQMYQAAAAAAG---PP 464

  Fly   316 PPPPAIEYARHIGGAY----PSWAYTPPSPASSVSSSSAGSTSGESAADREADADADTFVDVVGT 376
            ||||.:       ||:    ..|   |...|..::|::..:.:.::||..:|.|.|        .
  Fly   465 PPPPGL-------GAFHMFQQQW---PQLTAGFLASANQQAAAAQAAAQAQAQAQA--------A 511

  Fly   377 APAAPPPPSPPVPATATAPASSSS---DPTMAKPKRSSFS 413
            |.|.....:||.|.||:.|:|:||   .|.|...:...||
  Fly   512 AAAMAANRTPPPPPTASTPSSTSSGSPSPDMRPRQYQRFS 551

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc3NP_648280.1 T-box_Drosocross-like 59..241 CDD:410332 100/194 (52%)
midNP_608927.2 T-box_TBX20-like 186..382 CDD:410319 101/195 (52%)

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