DRSC/TRiP Functional Genomics Resources

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Protein Alignment Doc3 and mid

DIOPT Version :9

Sequence 1:NP_648280.1 Gene:Doc3 / 39036 FlyBaseID:FBgn0035954 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_001260096.1 Gene:mid / 33770 FlyBaseID:FBgn0261963 Length:580 Species:Drosophila melanogaster


Alignment Length:430 Identity:156/430 - (36%)
Similarity:217/430 - (50%) Gaps:75/430 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 CGLLPNFAG------HFMPPPPPPQPTLPGD--------VEAKLENNELWQQFHSIGTEMIITKC 84
            |...|...|      ...|.|....|.:.|.        |:..||..|||.:||.:||||||||.
  Fly   147 CSTPPQSPGTEDSEERLTPEPVQKAPKIVGSCNCDDLKPVQCHLETKELWDRFHDLGTEMIITKT 211

  Fly    85 GRRMFPSMRVSLSG----LEEEASYCVLLEMVPIGDCRYKFS--GSQWVPAGGAEPQSPQRMYLH 143
            ||||||::|||.||    ::....|.||::::|:...||:::  .|.|:.||.|:|..|.|:|.|
  Fly   212 GRRMFPTVRVSFSGPLRQIQPADRYAVLMDIIPMDSKRYRYAYHRSAWLVAGKADPAPPARLYAH 276

  Fly   144 PESPATGKHWQSQALLFSKVKLTNNTLDNNGHIVLASMHKYQPRLHVIRTSDLGQIPWAPQQ--- 205
            |:||.:.:..:.|.:.|.|||||||.:|.||.|||.|||:||||:|::|.|....||..|::   
  Fly   277 PDSPFSCEALRKQVISFEKVKLTNNEMDKNGQIVLNSMHRYQPRIHLVRLSHGQSIPSNPKELQD 341

  Fly   206 ----AFIFPETEFIAVTAYQNDRITKLKIDNNPFAKGFRESGQSRCKRKINDSPPPTQPEANQVD 266
                .::||||.|.|||||||..|||||||:||||||||:|.    :....|..|.......|..
  Fly   342 LDHKTYVFPETVFTAVTAYQNQLITKLKIDSNPFAKGFRDSS----RLTDFDRDPMEALLLEQQL 402

  Fly   267 RSPV---TSPLAKR---------LRLVEEFPQHHH----HQSHHSVPMQRHYLLDALEANFYVPA 315
            |||:   ..||.::         :.|.|:..||..    :..:..:.|.:.|...|..|.   |.
  Fly   403 RSPLRLFPDPLMQQFAAQGDPSSMALFEKARQHLQMFGGNSPYAQLMMPQMYQAAAAAAG---PP 464

  Fly   316 PPPPAIEYARHIGGAY----PSWAYTPPSPASSVSSSSAGSTSGESAADREADADADTFVDVVGT 376
            ||||.:       ||:    ..|   |...|..::|::..:.:.::||..:|.|.|        .
  Fly   465 PPPPGL-------GAFHMFQQQW---PQLTAGFLASANQQAAAAQAAAQAQAQAQA--------A 511

  Fly   377 APAAPPPPSPPVPATATAPASSSS---DPTMAKPKRSSFS 413
            |.|.....:||.|.||:.|:|:||   .|.|...:...||
  Fly   512 AAAMAANRTPPPPPTASTPSSTSSGSPSPDMRPRQYQRFS 551

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc3NP_648280.1 TBOX 58..245 CDD:238106 102/207 (49%)
midNP_001260096.1 TBOX 185..384 CDD:238106 102/202 (50%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45439051
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11267
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
43.840

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