DRSC/TRiP Functional Genomics Resources

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Protein Alignment Doc3 and Tbx19

DIOPT Version :9

Sequence 1:NP_648280.1 Gene:Doc3 / 39036 FlyBaseID:FBgn0035954 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_001381159.1 Gene:Tbx19 / 304935 RGDID:1310145 Length:448 Species:Rattus norvegicus


Alignment Length:421 Identity:135/421 - (32%)
Similarity:196/421 - (46%) Gaps:83/421 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 GDVEAK-----LENNELWQQFHSIGTEMIITKCGRRMFPSMRVSLSGLEEEASYCVLLEMVPIGD 116
            ||...|     ||:..|||:|..:..|||:||.||||||.:::|::||:..|.|.:||:.||...
  Rat    34 GDPTEKQLQIILEDAPLWQRFKEVTNEMIVTKNGRRMFPVLKISVTGLDPNAMYSLLLDFVPTDS 98

  Fly   117 CRYKFSGSQWVPAGGAEPQSPQRMYLHPESPATGKHWQSQALLFSKVKLTNNTLDNNGHIVLASM 181
            .|:|:...:|||||..|..|...:|:||:||..|.||....:.||||||||. |...|.|:|.|:
  Rat    99 HRWKYVNGEWVPAGKPEVSSHSCVYIHPDSPNFGAHWMKAPISFSKVKLTNK-LSGGGQIMLNSL 162

  Fly   182 HKYQPRLHVIRTSDLGQIPWAPQQAFIFPETEFIAVTAYQNDRITKLKIDNNPFAKGFRESGQSR 246
            |||:|::|::|.....::    .....||||:|||||||||:.||.|||..|||||.|.::.:..
  Rat   163 HKYEPQVHIVRVGGAHRM----VMNCSFPETQFIAVTAYQNEEITALKIKYNPFAKAFLDAKERN 223

  Fly   247 CKRKINDSPPPTQ--------------PE-------ANQVDRSPVTSPLAKRLRLVEEFP--QHH 288
            ..::|.::...:|              |:       ||....:|:..|........|.:.  :.|
  Rat   224 HLKEIPEAVSESQHVTYSHLGGWILSNPDGMCTTGSANYQYATPLPLPAPHTRHGCEHYAGLRGH 288

  Fly   289 HHQSHHSVPMQRHY-----LLDALEANFYV----------PAPPPPAIEYARHIGG-------AY 331
            ....:.|..|.|::     |:::...|..|          |:.|...|....|..|       .|
  Rat   289 RQAPYPSAYMHRNHSPSVNLIESSSNNLQVFSGPESWTSLPSAPHGGILSVPHTSGPINPGPSPY 353

  Fly   332 PS-WAYT-----PPSPASSVSSSSAGS--------TSGESAADREADADADTFVDVVG------- 375
            |. |..:     |.:..|.|.:|::|:        ||..|....:|...|.  |:|:|       
  Rat   354 PCLWTISNGGGGPVASGSEVHASASGTFLLGSPTVTSPSSLLPTQATTSAG--VEVLGEPSLTSI 416

  Fly   376 -----TAPAAPPPPSPPVPATATAPASSSSD 401
                 ||.|:.|.|....|..|...:.||.|
  Rat   417 AVSTWTAVASHPLPGWGGPGGAGRHSPSSLD 447

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc3NP_648280.1 TBOX 58..245 CDD:238106 88/191 (46%)
Tbx19NP_001381159.1 T-box_TBX19-like 36..218 CDD:410327 87/186 (47%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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