DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Doc3 and Tbx4

DIOPT Version :9

Sequence 1:NP_648280.1 Gene:Doc3 / 39036 FlyBaseID:FBgn0035954 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_035666.2 Gene:Tbx4 / 21387 MGIID:102556 Length:552 Species:Mus musculus


Alignment Length:502 Identity:164/502 - (32%)
Similarity:227/502 - (45%) Gaps:137/502 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 RLPDPLCGLLPNFAGHFMPPPPPPQPTLPG--------------------------DVEAKLENN 66
            |.|.|..|...|.:....|.|....|.|.|                          :::..|...
Mouse    15 RAPGPALGEASNTSTTNAPEPALATPGLSGAALSSPPGQGADVAAAAAAAAEQTIENIKVGLHEK 79

  Fly    67 ELWQQFHSIGTEMIITKCGRRMFPSMRVSLSGLEEEASYCVLLEMVPIGDCRYKFSGSQWVPAGG 131
            |||::||..||||||||.|||||||.:|.::|:..:..|.:|:::||..|.||||..::|:.||.
Mouse    80 ELWKKFHEAGTEMIITKAGRRMFPSYKVKVTGMNPKTKYILLIDIVPADDHRYKFCDNKWMVAGK 144

  Fly   132 AEPQSPQRMYLHPESPATGKHWQSQALLFSKVKLTNNTLDNNGHIVLASMHKYQPRLHVIRTSDL 196
            |||..|.|:|:||:|||||.||..|.:.|.|:|||||.||..|||:|.||||||||||::: :|.
Mouse   145 AEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGHIILNSMHKYQPRLHIVK-ADE 208

  Fly   197 GQIPWAPQQAF---IFPETEFIAVTAYQNDRITKLKIDNNPFAKGFRESGQS-----RCKRK--- 250
            .....:...||   :||||.||:||:|||.:||:|||:|||||||||.|..|     |.:.|   
Mouse   209 NNAFGSKNTAFCTHVFPETSFISVTSYQNHKITQLKIENNPFAKGFRGSDDSDLRVARLQSKEYP 273

  Fly   251 -INDSPPPTQPEANQVDRSPVTSPLAKRLRLVEEFPQHHHHQS---------------------- 292
             |:.|....:..::|:...|..||    |....:..||:.:::                      
Mouse   274 VISKSIMRQRLVSSQLSAKPDVSP----LHSAHQALQHYQYENGAHMQFAAAEPQDLPLNTFPTQ 334

  Fly   293 -----------------HHSVPMQRHYL--LDALEANFYVPAPPPPAIEYARHIGGAYPSWAYTP 338
                             |..:|.:|.||  ..::..:.|..:|||    |.:.:  ..||:....
Mouse   335 RDSSLFYHCLKRRDSARHLDLPCKRSYLETPSSVGDDHYFRSPPP----YDQQM--LSPSYCSEV 393

  Fly   339 PSPASSVSSSSAGSTSGESAADREADADADTFVDVVGTAPAAPPPP---------SP-------- 386
            ....:.:.|||....:|.||.|           |:       ||||         ||        
Mouse   394 TPREACMYSSSGPEIAGVSAVD-----------DL-------PPPPLSCNMWTSVSPYTSYSVQT 440

  Fly   387 -------PVPATATAPASSSSDPTMA-----KPKRSSFSISDILGTS 421
                   |.||..||.......||:|     .|..:.||:.:.|..|
Mouse   441 METVPYQPFPAHFTATTVMPRLPTIAAQSAQPPGNAHFSVYNQLSQS 487

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc3NP_648280.1 TBOX 58..245 CDD:238106 103/189 (54%)
Tbx4NP_035666.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..50 10/34 (29%)
TBOX 71..260 CDD:238106 103/189 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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