DRSC/TRiP Functional Genomics Resources

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Protein Alignment Doc3 and sea-1

DIOPT Version :9

Sequence 1:NP_648280.1 Gene:Doc3 / 39036 FlyBaseID:FBgn0035954 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_494611.1 Gene:sea-1 / 173710 WormBaseID:WBGene00004750 Length:376 Species:Caenorhabditis elegans


Alignment Length:208 Identity:59/208 - (28%)
Similarity:91/208 - (43%) Gaps:35/208 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 VEAKLENNELWQQFHSIGTEMIITKCGRRMFPSMRVSLSGLEEEASYCVLLEMVPIGDCRYK--- 120
            |:..|.|.|.|.:||.|||||::...|||:||.:...:|||:....||..:.|:|  |..||   
 Worm   167 VKISLANQEQWAKFHEIGTEMMVFNSGRRLFPLLAYKVSGLDPHKLYCAGVHMIP--DSAYKQEY 229

  Fly   121 -FSGSQWVPAGGAEPQSPQRMYLHPESPATGK-----HWQSQALLFSKVKLTN------------ 167
             ....|||..     .:.::....|.|...|:     ...|..:..|.||:.|            
 Worm   230 DHDLQQWVNC-----LNQKKTIFKPTSEILGRIENGFKLMSLGIDMSDVKIFNIAIRKKTPLQIE 289

  Fly   168 ----NTLDNNGHIVLASMHKYQPRLHVIRTSDLGQIPWAPQQAFIFPETEFIAVTAYQNDRITKL 228
                ..||....:::  .:||.|.:.:...|:.|.......|| .||||.|:.|:.|:|.:|.::
 Worm   290 KSRKPNLDKTIEVLI--QYKYLPVIKIYELSNSGMEKKEIAQA-TFPETSFVTVSIYRNQKIKEM 351

  Fly   229 KIDNNPFAKGFRE 241
            |...|.:.:..|:
 Worm   352 KTLGNKYCRTDRK 364

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc3NP_648280.1 TBOX 58..245 CDD:238106 59/208 (28%)
sea-1NP_494611.1 TBOX 167..369 CDD:214656 59/208 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.910

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