DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Doc3 and tbx19

DIOPT Version :9

Sequence 1:NP_648280.1 Gene:Doc3 / 39036 FlyBaseID:FBgn0035954 Length:424 Species:Drosophila melanogaster
Sequence 2:XP_003198807.1 Gene:tbx19 / 100538180 ZFINID:ZDB-GENE-110411-5 Length:436 Species:Danio rerio


Alignment Length:382 Identity:128/382 - (33%)
Similarity:184/382 - (48%) Gaps:64/382 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    59 VEAKLENNELWQQFHSIGTEMIITKCGRRMFPSMRVSLSGLEEEASYCVLLEMVPIGDCRYKFSG 123
            ::..||:.|||::|..:..|||:||.||||||.::||::||:..|.|..||:..|....|:|:..
Zfish    49 LKVSLEDAELWRKFKEVTNEMIVTKNGRRMFPVLKVSVTGLDPNAMYSFLLDFTPADGHRWKYVN 113

  Fly   124 SQWVPAGGAEPQSPQRMYLHPESPATGKHWQSQALLFSKVKLTNNTLDNNGHIVLASMHKYQPRL 188
            .:|||||..||.|...:|:||:||..|.||....:.|:||||||. |:..|.|:|.|:|||:|::
Zfish   114 GEWVPAGKPEPHSHSCVYIHPDSPNFGAHWMKAPVSFNKVKLTNK-LNGGGQIMLNSLHKYEPQI 177

  Fly   189 HVIRTSDLGQIPWAPQQAFIFPETEFIAVTAYQNDRITKLKIDNNPFAKGFRESGQSRCKRKIND 253
            |::|.....::    .....|.:|:|||||||||:.||.|||.:|||||.|.:: :.|...| |.
Zfish   178 HIVRVGGSHRM----VTNISFTDTQFIAVTAYQNEEITALKIKHNPFAKAFLDA-KERSHPK-NH 236

  Fly   254 SPPPTQPEANQVDRSP-----VTSPLAKRLRLVEEFP-------QHHHHQSHHSVPMQRHYLLDA 306
            ..||.:   ||....|     :::|.:........||       .||||...|...:..|.    
Zfish   237 LEPPVE---NQHMGIPHCGWFISNPDSLCSASGGNFPYPGGLPLTHHHHGYKHYPSLHGHR---- 294

  Fly   307 LEANFYVPAP-PPPAIEYARHIG-----------------GAYPSW-AYTPPSPASSVSSSSAGS 352
                   .|| |.|.:....|.|                 ..:.|| ..:||.||:.:|...|.:
Zfish   295 -------AAPYPSPYLPRHHHRGHNTVSLSDNLSPGVQMFSGHESWTGVSPPGPAAMLSMQPAPN 352

  Fly   353 TSGESAADREADADADTFVDVVGTAPAAPPPPSPPVPAT--ATAPASSSSDPTMAKP 407
            :.|.|:        ....:..|.:...:..||...|..|  ...||..:|  |.|.|
Zfish   353 SPGASS--------QYPCLWTVSSCTVSSSPPGGVVSLTHGQDEPADGAS--TSASP 399

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc3NP_648280.1 TBOX 58..245 CDD:238106 84/185 (45%)
tbx19XP_003198807.1 TBOX 48..230 CDD:238106 84/186 (45%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3585
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.