DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Doc3 and tbx4

DIOPT Version :9

Sequence 1:NP_648280.1 Gene:Doc3 / 39036 FlyBaseID:FBgn0035954 Length:424 Species:Drosophila melanogaster
Sequence 2:XP_002933872.1 Gene:tbx4 / 100488041 XenbaseID:XB-GENE-951382 Length:541 Species:Xenopus tropicalis


Alignment Length:429 Identity:150/429 - (34%)
Similarity:208/429 - (48%) Gaps:112/429 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 PPPPPPQPTLPGDVEAKLENNELWQQFHSIGTEMIITKCGRRMFPSMRVSLSGLEEEASYCVLLE 110
            |....|:.|:. :::..|...|||::||..||||||||.|||||||.:|.::|:..:..|.:|::
 Frog    44 PQSQDPEQTIE-NIKVYLHEKELWKKFHEAGTEMIITKAGRRMFPSYKVKVTGMNPKTKYILLID 107

  Fly   111 MVPIGDCRYKFSGSQWVPAGGAEPQSPQRMYLHPESPATGKHWQSQALLFSKVKLTNNTLDNNGH 175
            :||..|.||||..::|:.||.|||..|.|:|:||:|||||.||..|.:.|.|:|||||.||..||
 Frog   108 IVPADDHRYKFCDNKWMVAGKAEPAMPGRLYVHPDSPATGAHWMRQLVSFQKLKLTNNHLDPFGH 172

  Fly   176 IVLASMHKYQPRLHVIRTSDLGQIPWAPQQAF---IFPETEFIAVTAYQNDRITKLKIDNNPFAK 237
            |:|.||||||||||::: :|......:...||   :|.||.||:||:|||.:||:|||:||||||
 Frog   173 IILNSMHKYQPRLHIVK-ADENNAFGSKNTAFCTHVFSETSFISVTSYQNHKITQLKIENNPFAK 236

  Fly   238 GFRESGQS--RCKRKINDSPPPTQPEANQVDRSPVTSPLAKRLRLVEEFP--------------- 285
            |||.|..|  |..|.             |....||.|....|.|||...|               
 Frog   237 GFRGSDDSDLRVARL-------------QSKEYPVISKSIMRQRLVSSHPGQLSGKSDLNPLHGS 288

  Fly   286 ----QHHHHQS---------------------------------------HHSVPMQRHYL--LD 305
                ||:.:::                                       |..:|.:|.||  ..
 Frog   289 HQGLQHYQYENGAHMQFAPSDAQDLPLNTFTAQRDSGLFYHCLKRREGARHLDLPCKRSYLDPSS 353

  Fly   306 ALEANFYVPAPPPPAIEYARHIGGAYPSW--AYTPPSPASSVSSSSAGSTSGESAADREADADAD 368
            ::..:.|..:|||    |.:.:  ..||:  ..||..|.  :.|:|....:|.|..:        
 Frog   354 SMADDHYFRSPPP----YDQQM--LSPSYRNEVTPREPC--MYSTSGAEIAGVSGVE-------- 402

  Fly   369 TFVDVVGTAPAAPPPPSPPVPA---TATAPASSSSDPTM 404
               |:        |||.||:..   |:.:|.:|.|..||
 Frog   403 ---DL--------PPPPPPLSCNMWTSVSPYTSYSVQTM 430

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc3NP_648280.1 TBOX 58..245 CDD:238106 102/189 (54%)
tbx4XP_002933872.1 TBOX 55..244 CDD:238106 102/189 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.010

Return to query results.
Submit another query.