DRSC/TRiP Functional Genomics Resources

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Protein Alignment Doc3 and tbx5b

DIOPT Version :9

Sequence 1:NP_648280.1 Gene:Doc3 / 39036 FlyBaseID:FBgn0035954 Length:424 Species:Drosophila melanogaster
Sequence 2:NP_001185700.1 Gene:tbx5b / 100004161 ZFINID:ZDB-GENE-060601-2 Length:422 Species:Danio rerio


Alignment Length:373 Identity:131/373 - (35%)
Similarity:181/373 - (48%) Gaps:91/373 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 PPPQPTLPGD----VEAKLENNELWQQFHSIGTEMIITKCGRRMFPSMRVSLSGLEEEASYCVLL 109
            ||.|..|...    ::..|...:||.:||.:.|||||||.|||||||.:|.::||..:|.|.:|:
Zfish    39 PPLQTQLSQQSMEGIKVYLHEKDLWAKFHDVTTEMIITKAGRRMFPSYKVKVTGLNPKAKYILLM 103

  Fly   110 EMVPIGDCRYKFSGSQWVPAGGAEPQSPQRMYLHPESPATGKHWQSQALLFSKVKLTNNTLDNNG 174
            :::...:.||||:.::|..:|.|||..|.|:|:||:|||:|.||..|.:.|.|:|||||.||..|
Zfish   104 DIISADEHRYKFADNKWSISGKAEPAIPGRLYVHPDSPASGAHWMRQLVSFQKLKLTNNHLDPFG 168

  Fly   175 HIVLASMHKYQPRLHVIRTSDLGQIPWAPQQAFI---FPETEFIAVTAYQNDRITKLKIDNNPFA 236
            ||:|.||||||||||:::..:.... .:...:|.   |.||.|||||:|||..||:|||:|||||
Zfish   169 HIILNSMHKYQPRLHIVKADERNSF-GSSNTSFCTHSFAETTFIAVTSYQNHTITQLKIENNPFA 232

  Fly   237 KGFRESGQSRCKRKINDSPPPTQPEANQVDRSPVTS-PLAKRLRLVEEFPQHHHHQSHHSVPMQR 300
            ||||.          ||     ..|.:::.|:|... ||..|                 |...||
Zfish   233 KGFRG----------ND-----DIELHRMSRTPSKEYPLVPR-----------------STARQR 265

  Fly   301 HYLLDALEANFYVPAPPPP----AIEYARHIGGAYPSWAYTPPSPASSVSSSSAGSTSGESAADR 361
                         .|||.|    ..||.          ....|||..:.|.:|...:..|:.:..
Zfish   266 -------------AAPPSPDCLSRSEYT----------VTQKPSPGFTCSDTSGDQSLTETPSIH 307

  Fly   362 EADADADTFVDVVGTAPAAPPPPSPPVPATATAP--ASSSSDPTMAKP 407
            :                     |:.|:.:...:|  |.||.|.|..:|
Zfish   308 D---------------------PTYPLFSYQLSPDVAPSSMDTTQHQP 334

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Doc3NP_648280.1 TBOX 58..245 CDD:238106 95/193 (49%)
tbx5bNP_001185700.1 TBOX 52..240 CDD:238106 97/203 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11267
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
22.010

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