DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5087 and Herc6

DIOPT Version :9

Sequence 1:NP_648279.1 Gene:CG5087 / 39035 FlyBaseID:FBgn0035953 Length:1078 Species:Drosophila melanogaster
Sequence 2:NP_080268.1 Gene:Herc6 / 67138 MGIID:1914388 Length:1003 Species:Mus musculus


Alignment Length:1087 Identity:231/1087 - (21%)
Similarity:410/1087 - (37%) Gaps:260/1087 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 TNCLTLLPELKPENHADSLSLALFLHTLVVFTAPKSWAIL---RNAQFEKLQP--AMQKICCNIQ 202
            |:.:.||.....|:|    ||.||.:..|......||..|   |:...|:.:|  |:..:..::.
Mouse    19 TSGIELLQAASGEHH----SLLLFSNHRVYSCGDNSWGQLGQRRDQSTERPEPIQALNDLHVDLV 79

  Fly   203 GHLVQHDFYKIMRLVLIRGTV---------------REELSVKPVTLVAIITLCLRPLIDGNF-- 250
            ....:|..     .|..:|.|               .:|:|..|..:.|:..:.:..:..|::  
Mouse    80 SCGKEHSV-----AVCHKGKVFAWGAGSEGQLGIGEFKEISFMPTKIKALAGIKIIQVSCGHYHS 139

  Fly   251 ------------SRNL-----LAKFLSEILSVPALIYHLQQSVPQCLEQFSSMGLLKKALSISGD 298
                        .||.     |.| .|...::|..:..| :.:|  |.|.::.|....|||::| 
Mouse   140 LALSEDGHVFSWGRNSEGQLGLGK-NSRSQAIPQKVKSL-EGIP--LAQVAAGGTHSFALSLTG- 199

  Fly   299 VQWFEEFGTSMPGTKSLAFLGNIV-----------------------------------NLFNID 328
                ..||.....:..||..||.|                                   .:|...
Mouse   200 ----TSFGWGSNRSGQLALSGNKVKEQIYKPHSIGALKNLSVIYISCGYEHTAVLTEEGQVFTFG 260

  Fly   329 GQGESKELAYPLLTETTTSLLELIPNTV---------TTKGVFTQWHEL-LG---WHTPGP---- 376
            |....:....|...:....|:|.|...|         |...|:|....: ||   .||..|    
Mouse   261 GNSSGQLQPSPRSGQRGPQLIEGIGGRVSQIECASYHTIAYVYTTGQVVSLGRGPSHTSNPTHQE 325

  Fly   377 EPAQNQNVALIKKQFHMLWDHRCIKLLLGDLLKQINLNY---ERIEFQS---------PQQPSIS 429
            .||:|.::..      :|.....:.:.:.|:....:.|:   .|:....         |:...|:
Mouse   326 APAENSDITC------LLAAEDLVDIEVKDIFAGAHANFVTTRRVSHTRSTGVSMKILPEIIRIN 384

  Fly   430 NLL----RRALERSSTRG----VNLMGVASSKQSKQQWRKLDSAEVVQVSRICGMYYAALNTLSQ 486
            ..|    |.|.:|....|    ::|:..:|:..:....:|.|:.|               |.|..
Mouse   385 QSLVKKWRAANKRKDREGAKREISLIFSSSACLTASFLKKRDAGE---------------NNLID 434

  Fly   487 MKLDILTGICYSDNVLYDIWLLITSLGPNCGMKEYLELLKSETNLQKPQTAMLMLF-----CDCM 546
            :.|.:...:  ...:..:.|  |:||...| ::||   |..:.....|....|::|     |..|
Mouse   435 VDLKLARDV--FKKLTTEKW--ISSLITTC-LEEY---LLRDLPYSSPHQEALLVFLLLPECSIM 491

  Fly   547 ---THYVTILDE-----HEMYTEQNPFKLNDYVLLTYFLNNILYKLINDNLLAGAK-NIVQHPVF 602
               .::.|:..|     |:|..:...|....:..|.....|||.:::...:::..: .:......
Mouse   492 QDPKNWKTLAFEFAKAIHKMGPQSLAFLRTCWASLEVSSLNILVQMLKKAIISQIQYGVATEQYI 556

  Fly   603 LSLHTLMLCL---YRRDCRRPFTPPKHWLIPEVK---------PSTFI--NDLEKAKRNAMLLLA 653
            .::..|:..:   ::.:|:   .|...::|.|:.         ...||  |||:..:.:.|::.:
Mouse   557 TNIKVLLEVIKEVHKANCQ---LPESAFIINELSGIFNFDAEAGRMFIRHNDLDCTESSDMVVFS 618

  Fly   654 KMPHIIPHEDRVKLFR--KFVQNEKAVMGLTESACASPRSALIVIHRDRIVEDGYRQLAAQPTQA 716
            ....:.....::||.:  .||:....||...|. .:||...::.:.|..:|||..|||.......
Mouse   619 DFLFVFDLPSKIKLMKCDSFVKLMSEVMAFPEK-MSSPPYLILKVRRSHLVEDTLRQLRQVEDFD 682

  Fly   717 LKGVIRVRFINQQGLHEAGIDQDGVFKEFLEETIKKVFDPSLNLFKTTSDQRLYPS-------PI 774
            |:..:.|.|||:. ..|||    ||..||.....:::.||...:|       :||.       |:
Mouse   683 LRKQLSVGFINEI-RPEAG----GVSSEFFHCIFEEMTDPKYEMF-------IYPEKGSSMWFPV 735

  Fly   775 S--YVQDNHLELFEFVGRMLGKAVYEGIVVDVPFASFFLSQLLGQTQQALYSCMDELPSLDNELY 837
            :  :.:.::. ||   |.:.|.:::...|:::||......:||.|...     :::|..|...|.
Mouse   736 NPKFEKSSYF-LF---GILCGLSLHNLKVINLPFPLALYKKLLNQKPS-----LEDLKELSLPLG 791

  Fly   838 RSLTFIKHYKQ-DVSDLNLTFSV--DQ-DVMGKIVTLALHPGGKARVVNDHNKLVYIHYMAFFHM 898
            |:|..:.:.:. |:.:|::.||:  || ||       .|.|.|.:..||:.||..|:.....:..
Mouse   792 RNLQEVLNCEAGDIEELHMYFSIYWDQKDV-------DLIPDGISVPVNETNKRDYVSKYVDYIF 849

  Fly   899 NTQIREQTIAFNRGFRSIVNPEWLSLFSPPELQRLISGDTSPLDLKDLQKHTHYYGGFHDTHQVV 963
            |..|:.....|:|||..:.|.:.:..|.|.||...|.|:.: .|.|..:.::.|..|:..:|..:
Mouse   850 NISIKTIYEEFHRGFYKVCNWDIIRQFQPEELMTAIIGNAT-CDWKQFENNSKYKDGYDKSHPTI 913

  Fly   964 CWLWDILAKDFTEEERKLFLKFVTSCSKPPLLGFAHLEPPFSIRCVEVSDDEDTGDTIGSVIRGF 1028
            ...|... .|.|.:|:|.||.|:|.|.:..:.|..:....|  ||.|...:||.           
Mouse   914 LLFWKAF-HDLTLDEKKKFLLFLTGCDRLHVKGLQNEGIVF--RCSETFSEEDN----------- 964

  Fly  1029 FAIRKKDPLNRLPTSSTCFNLLKLPNYQKKSTLRDKLRYAVSSNTGF 1075
                        |.|.||..:|.||.|.....:::.|:.|::::|||
Mouse   965 ------------PRSLTCHRMLDLPKYSSMRRMKEALQVAINNSTGF 999

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5087NP_648279.1 HECTc 694..1076 CDD:238033 104/395 (26%)
HECTc 718..1075 CDD:214523 94/369 (25%)
Herc6NP_080268.1 RCC1 1 40..91 10/55 (18%)
RCC1 40..89 CDD:278826 9/53 (17%)
RCC1 2 92..144 7/51 (14%)
RCC1 92..142 CDD:278826 7/49 (14%)
RCC1 145..195 CDD:278826 11/53 (21%)
RCC1 3 146..197 13/54 (24%)
RCC1_2 183..211 CDD:290274 8/32 (25%)
RCC1 4 199..252 8/57 (14%)
RCC1_2 237..266 CDD:290274 2/28 (7%)
RCC1 5 253..303 8/49 (16%)
RCC1 253..300 CDD:278826 8/46 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 261..281 2/19 (11%)
chaperonin_like <570..>652 CDD:295468 17/85 (20%)
HECTc 658..999 CDD:238033 102/395 (26%)
HECTc 682..999 CDD:214523 95/371 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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