DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5087 and herc3

DIOPT Version :9

Sequence 1:NP_648279.1 Gene:CG5087 / 39035 FlyBaseID:FBgn0035953 Length:1078 Species:Drosophila melanogaster
Sequence 2:NP_001139096.1 Gene:herc3 / 100003587 ZFINID:ZDB-GENE-090313-139 Length:1046 Species:Danio rerio


Alignment Length:613 Identity:155/613 - (25%)
Similarity:262/613 - (42%) Gaps:103/613 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   523 ELLKSETNLQKPQ----------TAMLMLFCDC-----MTHYVTI----------LDEHEMYTEQ 562
            ::.||..:|..||          ..:.::..:|     ..:|:|:          ||.:......
Zfish   478 QITKSFESLLIPQLPCSPPDVEAMRIYLILSECPAFQDSKNYITLTIPLAMAILRLDANPSKVLD 542

  Fly   563 NPFKLNDYVLLTYFLNNILYKLINDNLLAGAKNIVQHPVFLSLHT-----LMLCLYRRDCRRPFT 622
            |.:.|.|..:.|..:.  :||.|...||.|.|.::. ||||..:|     |:..|::.:.:....
Zfish   543 NWWSLMDCTVFTRLVE--MYKSIVVFLLTGGKALLM-PVFLESYTSAALRLLEKLHKVNLKAHRV 604

  Fly   623 PPKHWLIPEVKPSTFIND------LEKA-------KRNAMLLLAKMPHIIPHEDRVKLFR--KFV 672
            ...|:.||::.....|.:      |.||       .....:.|...|.|:..:.:..:.:  ..:
Zfish   605 EYNHFYIPDIATLVDIQEDYLKWFLRKADIKMRYPPVQGSVTLCAYPFILNAQAKTTVLQTDAEL 669

  Fly   673 QNEKAVMG---------LTESACASPRSALIVIH--RDRIVEDGYRQLAAQPTQALKGVIRVRFI 726
            |.:.||.|         ||.....: |:..:|:|  |:.:|.|..|:|.......||..::|.|.
Zfish   670 QMQMAVSGANLHNVFMLLTMEPLLA-RNPFLVLHVRRNHLVSDALRELTIYNDVDLKKPLKVIFD 733

  Fly   727 NQQGLHEAGIDQDGVFKEFLEETIKKVFDPSLNLFKTTSDQR-LYPSPISYVQDNHLELFEFVGR 790
            .     |..:|..||.|||....:|::.:|...:|...|:.. |:.|...:|:.|   .|..:|.
Zfish   734 G-----EEAVDAGGVTKEFFLLLLKELMNPIYGMFTQYSESNLLWFSDKCFVEHN---WFHLIGI 790

  Fly   791 MLGKAVYEGIVVDVPFASFFLSQLLGQTQQALYSCMDELPSLDNELYRSLTFIKHYKQDVSD-LN 854
            :.|.|:|...|||:.|......:||     .:...:|:|..|.....|||..:..::.||.: ..
Zfish   791 ICGLAIYNSTVVDLHFPLVLYKKLL-----EISPTLDDLKELSPTEGRSLQQLLEFEGDVEETFC 850

  Fly   855 LTFSVDQDVMGKIVTLALHPGGKARVVNDHNKLVYIHYMAFFHMNTQIREQTIAFNRGFRSIVNP 919
            |.|::.::..|......|..|||...|:..|:..::.....:..:..::||..||:.||..:...
Zfish   851 LNFAITREYYGITEVKELVQGGKTIAVDKTNRKEFVQAYLQYVFSDAVQEQYSAFSSGFLKVCGG 915

  Fly   920 EWLSLFSPPELQRLISGDTSPLDLKDLQKHTHYYGGFHDTHQVVCWLWDILAKDFTEEERKLFLK 984
            |.||||.|.||..::.|:.: .:.::::|:..|.|.|..||..|...|::. .:|:.|::|.||.
Zfish   916 EILSLFQPSELMAMVVGNNN-YNWEEMEKNASYKGEFSATHPTVKMFWEVF-HEFSLEKKKQFLL 978

  Fly   985 FVTSCSKPPLLGFAHLEPPFSIRCVEVSDDEDTGDTIGSVIRGFFAIRKKDPLNRLPTSSTCFNL 1049
            |:|...:.|:.|.|      |:|.|..|...:.                    :.||.:.||:|:
Zfish   979 FLTGSDRIPIHGMA------SLRIVIQSTAAEE--------------------HYLPVAHTCYNM 1017

  Fly  1050 LKLPNYQKKSTLRDKLRYAVSSNTGFEL 1077
            |.:|.||.|.|||.:|..||....||.|
Zfish  1018 LDMPCYQTKETLRQRLTQAVEQYEGFSL 1045

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5087NP_648279.1 HECTc 694..1076 CDD:238033 108/385 (28%)
HECTc 718..1075 CDD:214523 99/358 (28%)
herc3NP_001139096.1 RCC1 4..49 CDD:278826
RCC1_2 37..65 CDD:290274
RCC1 52..99 CDD:278826
RCC1 103..152 CDD:278826
RCC1 155..205 CDD:278826
RCC1 208..257 CDD:278826
RCC1 260..308 CDD:278826
RCC1 314..374 CDD:278826
HECTc 699..1044 CDD:238033 108/385 (28%)
HECTc 723..1043 CDD:214523 100/360 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5021
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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