DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5087 and herc3

DIOPT Version :10

Sequence 1:NP_648279.1 Gene:CG5087 / 39035 FlyBaseID:FBgn0035953 Length:1078 Species:Drosophila melanogaster
Sequence 2:NP_001139096.1 Gene:herc3 / 100003587 ZFINID:ZDB-GENE-090313-139 Length:1046 Species:Danio rerio


Alignment Length:613 Identity:155/613 - (25%)
Similarity:262/613 - (42%) Gaps:103/613 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly   523 ELLKSETNLQKPQ----------TAMLMLFCDC-----MTHYVTI----------LDEHEMYTEQ 562
            ::.||..:|..||          ..:.::..:|     ..:|:|:          ||.:......
Zfish   478 QITKSFESLLIPQLPCSPPDVEAMRIYLILSECPAFQDSKNYITLTIPLAMAILRLDANPSKVLD 542

  Fly   563 NPFKLNDYVLLTYFLNNILYKLINDNLLAGAKNIVQHPVFLSLHT-----LMLCLYRRDCRRPFT 622
            |.:.|.|..:.|..:.  :||.|...||.|.|.::. ||||..:|     |:..|::.:.:....
Zfish   543 NWWSLMDCTVFTRLVE--MYKSIVVFLLTGGKALLM-PVFLESYTSAALRLLEKLHKVNLKAHRV 604

  Fly   623 PPKHWLIPEVKPSTFIND------LEKA-------KRNAMLLLAKMPHIIPHEDRVKLFR--KFV 672
            ...|:.||::.....|.:      |.||       .....:.|...|.|:..:.:..:.:  ..:
Zfish   605 EYNHFYIPDIATLVDIQEDYLKWFLRKADIKMRYPPVQGSVTLCAYPFILNAQAKTTVLQTDAEL 669

  Fly   673 QNEKAVMG---------LTESACASPRSALIVIH--RDRIVEDGYRQLAAQPTQALKGVIRVRFI 726
            |.:.||.|         ||.....: |:..:|:|  |:.:|.|..|:|.......||..::|.|.
Zfish   670 QMQMAVSGANLHNVFMLLTMEPLLA-RNPFLVLHVRRNHLVSDALRELTIYNDVDLKKPLKVIFD 733

  Fly   727 NQQGLHEAGIDQDGVFKEFLEETIKKVFDPSLNLFKTTSDQR-LYPSPISYVQDNHLELFEFVGR 790
            .     |..:|..||.|||....:|::.:|...:|...|:.. |:.|...:|:.|   .|..:|.
Zfish   734 G-----EEAVDAGGVTKEFFLLLLKELMNPIYGMFTQYSESNLLWFSDKCFVEHN---WFHLIGI 790

  Fly   791 MLGKAVYEGIVVDVPFASFFLSQLLGQTQQALYSCMDELPSLDNELYRSLTFIKHYKQDVSD-LN 854
            :.|.|:|...|||:.|......:||     .:...:|:|..|.....|||..:..::.||.: ..
Zfish   791 ICGLAIYNSTVVDLHFPLVLYKKLL-----EISPTLDDLKELSPTEGRSLQQLLEFEGDVEETFC 850

  Fly   855 LTFSVDQDVMGKIVTLALHPGGKARVVNDHNKLVYIHYMAFFHMNTQIREQTIAFNRGFRSIVNP 919
            |.|::.::..|......|..|||...|:..|:..::.....:..:..::||..||:.||..:...
Zfish   851 LNFAITREYYGITEVKELVQGGKTIAVDKTNRKEFVQAYLQYVFSDAVQEQYSAFSSGFLKVCGG 915

  Fly   920 EWLSLFSPPELQRLISGDTSPLDLKDLQKHTHYYGGFHDTHQVVCWLWDILAKDFTEEERKLFLK 984
            |.||||.|.||..::.|:.: .:.::::|:..|.|.|..||..|...|::. .:|:.|::|.||.
Zfish   916 EILSLFQPSELMAMVVGNNN-YNWEEMEKNASYKGEFSATHPTVKMFWEVF-HEFSLEKKKQFLL 978

  Fly   985 FVTSCSKPPLLGFAHLEPPFSIRCVEVSDDEDTGDTIGSVIRGFFAIRKKDPLNRLPTSSTCFNL 1049
            |:|...:.|:.|.|      |:|.|..|...:.                    :.||.:.||:|:
Zfish   979 FLTGSDRIPIHGMA------SLRIVIQSTAAEE--------------------HYLPVAHTCYNM 1017

  Fly  1050 LKLPNYQKKSTLRDKLRYAVSSNTGFEL 1077
            |.:|.||.|.|||.:|..||....||.|
Zfish  1018 LDMPCYQTKETLRQRLTQAVEQYEGFSL 1045

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5087NP_648279.1 IQCD 20..50 CDD:467745
HECTc 694..1076 CDD:238033 108/385 (28%)
herc3NP_001139096.1 ATS1 4..339 CDD:444065
RCC1 314..374 CDD:395335
HECTc 699..1044 CDD:238033 108/385 (28%)
Blue background indicates that the domain is not in the aligned region.

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