DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smg and Zcchc2

DIOPT Version :9

Sequence 1:NP_001137924.1 Gene:smg / 39034 FlyBaseID:FBgn0016070 Length:1109 Species:Drosophila melanogaster
Sequence 2:NP_001116149.2 Gene:Zcchc2 / 304695 RGDID:1310626 Length:1169 Species:Rattus norvegicus


Alignment Length:990 Identity:177/990 - (17%)
Similarity:279/990 - (28%) Gaps:342/990 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   221 KLIYLTLIPVAVKDTMQQI------VPTELVQQIFSYLLI----HPAITSEDRR--SLNIWLRHL 273
            |:.:..|....|..|.|::      :|.|...:.|...::    ..::..|:||  .|...||.|
  Rat   371 KVNWSDLSVTTVTKTHQELQEFLLKLPKEFSSESFDKTILKALNQGSLRREERRHPDLEPILRQL 435

  Fly   274 -EDHIQAAAAGLTNRSYFLQPSPQLVAGGSSTGSGSCSSSATSSSTASCSSVASSS----LCPAS 333
             ....||.......||:|                .|.||.:..|.....||:.:|.    |...|
  Rat   436 FSTSPQAFLQSHKVRSFF----------------RSISSESQHSFNNLQSSLKTSKILEHLKEDS 484

  Fly   334 GSRSSRTNDWQTIAPPSKQLQNKLAGDWRGNGGGSSSG-SINPLCDNLNGITLNELASSQNSLGL 397
            ...||:..|         .||:.:.  .:.:.|.|.:| |:...|..|.|:|:.....       
  Rat   485 SEASSQEED---------VLQHTII--HKKHAGKSPAGNSVATSCALLEGLTMQYAEQ------- 531

  Fly   398 SLEGSSSLVNGVVAGAGSMLGIAGGDDHDTSFSKNGTEILDFDPVTADMGEACSLASSSLCGRNG 462
                     ||||.............:|..|              :||...|...:.||:..:.|
  Rat   532 ---------NGVVDWRNQGCAAIQHSEHCVS--------------SADQLSAEKRSLSSVNKKKG 573

  Fly   463 GNPVEDRSQPPPNLQQQLLQPPPYASILMGNVGDQFGEINRWSLDSKIAALKTRRSNSLTTQTIS 527
            ...||                                       ..||...:.|.|:.:....:|
  Rat   574 KPQVE---------------------------------------KEKIKKTENRLSSRINGIRLS 599

  Fly   528 SCSSSSNSSVITVN-------DNCSNSTENLAQFANKPR---SFSLSIEHQRGALMNSGSDTRLD 582
            :...:..|:|..:|       |.|..::.......:.||   ..||..|.::....:|.|:   |
  Rat   600 APQHAHGSTVKDMNLDVGSGHDTCGETSSESYSSPSSPRHDGRESLESEEEKDRDTDSNSE---D 661

  Fly   583 EFKPNYIKF----------------HTRNVGMSGIGLWLKSLRLHKYIELFKNMTYEEMLLITED 631
            ...|:..:|                .|.::|.....|....|..|||..:              .
  Rat   662 SGNPSSARFAGHGSVTQTVSVQPPADTVSLGTENGNLLEAPLTSHKYPHI--------------P 712

  Fly   632 FLQSVG-VTKGASHKLALCIDKLKERANILNRVEQELLSGQMELSTAVEELTNI----VLTP--- 688
            |:.::. |....:.|..:.|...|...   .:....|:...:.:||.:|. ||.    :|.|   
  Rat   713 FMPTLPCVMHNGAQKSEVVIPSPKSAD---GKAVGVLVPNPVAISTMMES-TNAAPVGILGPAAS 773

  Fly   689 ----------MKPLESPGP-------PEENIGLRFLKVIDIVTNTLQQDPYAVQDDETLGVLMWI 736
                      ..||..|.|       |...:.|:.||:         |.|....::..:.:....
  Rat   774 GESEKHLELLASPLPIPSPFLPHSSAPALQLTLQSLKL---------QPPQGASENCPVNIPQQA 829

  Fly   737 LDR-----------SIHN------------EAFMNHASQLKDLKFKLSKMKISMVPKMHHVKPAG 778
            ..|           .:||            :.....|||:..|.        .|||::.......
  Rat   830 ATRLSIGSPNTALIPVHNPGAFPGSPVAATDPITKSASQVVGLN--------QMVPQIEGNTGTV 886

  Fly   779 VGPNNGNINKP-------------RWNGKTRKCDTKNGSNDRINNRKNSNDMLNFSL----NCLP 826
            ..|||..:..|             .:.|...........|..:.|...|....:..:    :.:|
  Rat   887 PQPNNVKVVLPAAGLSAAQPPASYTFPGSPLAASVLPTQNSTVLNTATSAQPASTGISPAQSTVP 951

  Fly   827 HPLPHHSQ-QAPPPLPQFDYNGYGGGPSHQPQYKSSSYPSFMGNPQQQP---PPPP--------- 878
            ..:|.|:. .||.|.|...::        ..|..|:||.|.:||.....   ||.|         
  Rat   952 PAVPTHTPGPAPSPSPALTHS--------TAQSDSTSYISAVGNTNANSTIVPPQPLGPCGSCGR 1008

  Fly   879 ----------SSKSHHHPQQMQQMLQQHNHFPALPQ----QTPPQSHRRSLNNLILVAGGPQQP- 928
                      ...|:::|..|...:.:...|..||.    ....|:|:.:.|.|....  ||.| 
  Rat  1009 RCSCGTNGNLQLNSYYYPNPMPGPMYRLPSFFTLPSICNGSYLNQAHQSNGNQLPFFL--PQTPY 1071

  Fly   929 -QQLIFKPGQGVLTNNGSNDNLVLERNQQSQQQQQQRKLSGGVSSAEQQPKKTMAAVVMVSNPNQ 992
             ..|:..|..|                  ||.....::::|........|...:.|....|.|.:
  Rat  1072 ANGLVHDPVMG------------------SQASYGMQQMAGFGRLYPVYPAPNVVANTSGSGPKK 1118

  Fly   993 NQDQHDQPQILINNNNNNSMLNNNLINQQQLQLLAAAAAAVGSGSCLCSNGGGGACVHNICHQSS 1057
            |                                          ||..|.|.|........|.|||
  Rat  1119 N------------------------------------------GSVSCYNCGVSGHYAQDCKQSS 1141

  Fly  1058 KNNNHGVDHCLSQSP 1072
            ...|....:.|..:|
  Rat  1142 MEANQQGTYRLRYAP 1156

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smgNP_001137924.1 SAM_Smaug 597..655 CDD:188956 10/58 (17%)
SAM 601..656 CDD:197735 10/55 (18%)
PHAT 656..763 CDD:204178 25/153 (16%)
Zcchc2NP_001116149.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..87
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 209..242
PX_domain 356..456 CDD:295365 20/100 (20%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 562..694 27/173 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 933..979 9/53 (17%)
zf-CCHC 1124..1139 CDD:278525 4/14 (29%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3791
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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