DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smg and SAMD4A

DIOPT Version :9

Sequence 1:NP_001137924.1 Gene:smg / 39034 FlyBaseID:FBgn0016070 Length:1109 Species:Drosophila melanogaster
Sequence 2:XP_024305282.1 Gene:SAMD4A / 23034 HGNCID:23023 Length:754 Species:Homo sapiens


Alignment Length:961 Identity:204/961 - (21%)
Similarity:338/961 - (35%) Gaps:340/961 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 LFCEQVTTVTNLFEKWNDCERTVVMYALLKRLRYPSLKFLQYSIDSNLTQNLGTSQTNLSSVVID 137
            :|.:||..:...|:.||:||:||.:.:||||:.....:|||..::.:|..   .::.:    |::
Human     2 MFRDQVGVLAGWFKGWNECEQTVALLSLLKRVSQTQARFLQLCLEHSLAD---CAELH----VLE 59

  Fly   138 INANNPVYLQNLLNAYKTFQPCDLLDAMSSSSSDKDSMPCYGSDFQITTSAQCDERKLYARKEDI 202
            ..||:|    .::|.::            ..|.||                             :
Human    60 REANSP----GIINQWQ------------QESKDK-----------------------------V 79

  Fly   203 LHEVLNMLPLLKPGNEEAKLIYLTLIPVAVKDTMQQIVPTELVQQIFSYLLIHPAITSEDRRSLN 267
            :..:|..||||||||.:||:.|:.|:|..:..:::.....|..:|:.||.|||||.:.|||.:|.
Human    80 ISLLLTHLPLLKPGNLDAKVEYMKLLPKILAHSIEHNQHIEESRQLLSYALIHPATSLEDRSALA 144

  Fly   268 IWLRHLEDHIQAAAAGLTNRSYFLQPSPQLVAGGSSTGSGSCSSSATSSSTASCSSVASSSLCPA 332
            :||.||||.        |:.|:          ||.:.|.   |.|.....|.......:|     
Human   145 MWLNHLEDR--------TSTSF----------GGQNRGR---SDSVDYGQTHYYHQRQNS----- 183

  Fly   333 SGSRSSRTNDWQTIAPPSKQLQNKLAGDWRGNGGGSSSGSINPLCDNLNGITLNELASSQNSLGL 397
                ..:.|.||........:.   |.:|:....|..:|.: ||..:      :.:.::.|::|.
Human   184 ----DDKLNGWQNSRDSGICIN---ASNWQDKSMGCENGHV-PLYSS------SSVPTTINTIGT 234

  Fly   398 SLEGSSSLVNGVVAGAGSMLGIAGGDDHDTSFSKNGTEILDFDPVTADMGEACSLASSSLCGRNG 462
            |   :|::::              |..|.:...:                      |.||     
Human   235 S---TSTILS--------------GQAHHSPLKR----------------------SVSL----- 255

  Fly   463 GNPVEDRSQPPPNLQQQLLQPPPYASILMGNVGDQFGEINRWSLDSKIAALKTRRSNSLTTQTIS 527
                    .||.|:..|.|.                   :.|.....:.|...:           
Human   256 --------TPPMNVPNQPLG-------------------HGWMSHEDLRARGPQ----------- 282

  Fly   528 SCSSSSNSSVITVNDNCSNSTENLAQFANKPRSFSLSIEHQRGALMNSGSDTRLDEFKPNYIKFH 592
             |..|.::                      |.|...|:     |...||....|::.......|.
Human   283 -CLPSDHA----------------------PLSPQSSV-----ASSGSGGSEHLEDQTTARNTFQ 319

  Fly   593 TRNVGMSGIGLWLKSLRLHKYIELFKNMTYEEMLLITEDFLQSVGVTKGASHKLALCIDKLKERA 657
            ....||..:..||||||||||..||..||||||:.:||..|::..|||||.||:.:.|.|||||.
Human   320 EEGSGMKDVPAWLKSLRLHKYAALFSQMTYEEMMALTECQLEAQNVTKGARHKIVISIQKLKERQ 384

  Fly   658 NILNRVEQELLSGQMELSTAVEELTNIVLTPMKPLESP--------------------GP----- 697
            |:|..:|::::.|. .|...::||..::|||:|...||                    ||     
Human   385 NLLKSLERDIIEGG-SLRIPLQELHQMILTPIKAYSSPSTTPEARRREPQAPRQPSLMGPESQSP 448

  Fly   698 ----------------------------------------PEENIGLRFLKVI-DIVTNTLQQDP 721
                                                    ||.::..:|.:|: .:.|..|...|
Human   449 DCKDGAAATGATATPSAGASGGLQPHQLSSCDGELAVAPLPEGDLPGQFTRVMGKVCTQLLVSRP 513

  Fly   722 YAVQDDETLGVLMWILDRSIHNEAF--------MNHASQLKDLKFKLSKMKISMVPKMHHVKPAG 778
                |:|.:...:.::|:.:.:|||        ::...|::.|.....:..:..:......:..|
Human   514 ----DEENISSYLQLIDKCLIHEAFTETQKKRLLSWKQQVQKLFRSFPRKTLLDISGYRQQRNRG 574

  Fly   779 VGPNN-----GNI--NKPRWNGKTRKCDTKNGSNDRI----------NNRKNSNDMLNFSLNCLP 826
            .|.:|     |::  ...|.|.:..:..::|..:.|:          :|::|:.           
Human   575 FGQSNSLPTAGSVGGGMGRRNPRQYQIPSRNVPSARLGLLGTSGFVSSNQRNTT----------- 628

  Fly   827 HPLPHHSQQAPPPLPQFDYNGYGGGPSHQPQYKSSSYPSFMGNPQQQPPPPPSSKSHHHPQQMQQ 891
                    ..|..:.|...|.:...|.     .|:|.||...:..|:....|   .|..||.|..
Human   629 --------ATPTIMKQGRQNLWFANPG-----GSNSMPSRTHSSVQRTRSLP---VHTSPQNMLM 677

  Fly   892 MLQQHNHFPALPQQTPPQSHR----RSLNNLILVAGGPQQPQQLIFKPGQG 938
            .           ||...|.|.    ..|...:.::|.|..|...:.|..||
Human   678 F-----------QQPGSQVHSGLCLTDLRGWLSLSGAPSMPALTVPKSSQG 717

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smgNP_001137924.1 SAM_Smaug 597..655 CDD:188956 33/57 (58%)
SAM 601..656 CDD:197735 32/54 (59%)
PHAT 656..763 CDD:204178 31/180 (17%)
SAMD4AXP_024305282.1 SAM_Smaug 320..382 CDD:188956 33/61 (54%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165149632
Domainoid 1 1.000 71 1.000 Domainoid score I9450
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 192 1.000 Inparanoid score I3867
Isobase 1 0.950 - 0.928771 Normalized mean entropy S6281
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D297836at33208
OrthoFinder 1 1.000 - - FOG0002446
OrthoInspector 1 1.000 - - otm41521
orthoMCL 1 0.900 - - OOG6_106131
Panther 1 1.100 - - O PTHR12515
Phylome 00.000 Not matched by this tool.
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1666
SonicParanoid 1 1.000 - - X2618
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
1211.970

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