DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smg and samd4b

DIOPT Version :9

Sequence 1:NP_001137924.1 Gene:smg / 39034 FlyBaseID:FBgn0016070 Length:1109 Species:Drosophila melanogaster
Sequence 2:XP_021322196.1 Gene:samd4b / 100330543 -ID:- Length:674 Species:Danio rerio


Alignment Length:913 Identity:207/913 - (22%)
Similarity:318/913 - (34%) Gaps:322/913 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    73 LFCEQVTTVTNLFEKWNDCERTVVMYALLKRLRYPSLKFLQYSIDSNLTQNLGTSQTNLSSV-VI 136
            :|.:||..:|:.|:.||:||:||.:.:||||:.....:||...:|..|        .:.:.: ::
Zfish     2 MFRDQVGVLTDWFKGWNECEQTVALLSLLKRVSRTQARFLHICLDHWL--------ADCTEIHIL 58

  Fly   137 DINANNPVYLQNLLNAYKTFQPCDLLDAMSSSSSDKDSMPCYGSDFQITTSAQCDERKLYARKED 201
            :..|||...:                                 |.:|            ...||.
Zfish    59 EAEANNAAIV---------------------------------SQWQ------------QEPKEK 78

  Fly   202 ILHEVLNMLPLLKPGNEEAKLIYLTLIPVAVKDTMQQIVPTELVQQIFSYLLIHPAITSEDRRSL 266
            ::..:|:.||||:|.|.|||..|:.|:...:..|::..:..|..:|:.||.|||||.|.|||.||
Zfish    79 VVSLLLSHLPLLQPRNSEAKCEYMHLLQKVLSHTIESSLFVEESRQLLSYALIHPATTLEDRTSL 143

  Fly   267 NIWLRHLEDHIQAAAAGLTNRSYFLQPSPQLVAGGSSTGSGS--CSSSATSSS-------TASCS 322
            .:||.|||:.:.|            :|.|.........||..  ||:.|..|.       .::||
Zfish   144 AMWLNHLEEQLSA------------RPPPPGPYHHCRQGSDEWPCSAEALESGYSWQEKLPSTCS 196

  Fly   323 SVASSS---LCPASGSRSSRTNDWQTIAPPSKQLQNKLAGDWRGNGGGSSSGSINPLCDNLNGIT 384
            |.||.:   ..||:|..||..|...|..|...|                    .:||..:::...
Zfish   197 SPASHNGHMPFPAAGGVSSPVNSSSTGLPGQVQ--------------------PSPLKPSMSLAP 241

  Fly   385 LNELASSQNSLGLSLEGSSSLVNGVVAGAGSMLGIAGGDDHDTSFSKNGTEILDFDPVTADMGEA 449
            .|:.|.|.:.|        |...|||....|      |.:|                  |.:...
Zfish   242 ANQTACSSDWL--------SQDEGVVCQGMS------GAEH------------------APLSPQ 274

  Fly   450 CSLASSSLCGRNGGNPVEDRSQPPPNLQQQLLQPPPYASILMGNVGDQFGEINRWSLDSKIAALK 514
            .|:|||      |....|:::                                            
Zfish   275 SSVASS------GSEQTEEQT-------------------------------------------- 289

  Fly   515 TRRSNSLTTQTISSCSSSSNSSVITVNDNCSNSTENLAQFANKPRSFSLSIEHQRGALMNSGSDT 579
                                                                :.|......||  
Zfish   290 ----------------------------------------------------NMRNTFQEDGS-- 300

  Fly   580 RLDEFKPNYIKFHTRNVGMSGIGLWLKSLRLHKYIELFKNMTYEEMLLITEDFLQSVGVTKGASH 644
                             ||..:..||||||||||..||..||||||:::||..|:|..|||||.|
Zfish   301 -----------------GMKDVPAWLKSLRLHKYASLFSQMTYEEMMILTEQHLESQNVTKGARH 348

  Fly   645 KLALCIDKLKERANILNRVEQELLSGQMELSTAVEELTNIVLTPMK-----------------PL 692
            |:||.|.||:||.::|..:|:::|.|. .:..|::||..|::||:|                 |:
Zfish   349 KIALSIQKLRERQSVLRSLEKDILEGG-NVRNALQELQQIIITPIKVYAPPTAAQKEVEPGVTPV 412

  Fly   693 E---SPGPPEENIGL------------------------RFLKVI-DIVTNTLQQDPYAVQDDET 729
            |   :||..:|..|.                        :|.:|: .:.|..|...|    |:|.
Zfish   413 EKAANPGEEKETEGFQTHNPPACDGESSSPPIADGDITGQFTRVMGKVCTQLLVSRP----DEEN 473

  Fly   730 LGVLMWILDRSIHNEAFMNHASQLKDLKFKLSKMKISMV----PKMHHVKPAGVGPNNGNINKPR 790
            :...:.:|::.:.:||| ....:.:.|.:|...:|:..:    |.|.........|..|:.:.|.
Zfish   474 ISCYLQLLEKCLTHEAF-TETQKKRLLSWKQQVLKLLRLFPRKPMMDSAVYRRGWPAYGSNSLPT 537

  Fly   791 WNGKTRKCDTKNGSNDRINNR--KNSNDMLNFSLNCLPHPLPHHSQQAPPPL-PQFDYNGYGGGP 852
            ....:.....:.....:|..|  ..|..:...:...|....|.|:...|..: .|...|.:.|.|
Zfish   538 AGSVSAGLGRRGQRGFQIPPRGAPPSGRISLMTAGALSGASPRHTLANPTAVSAQGRQNLWFGNP 602

  Fly   853 SHQPQYKSSSYPSFMGNPQQQPPPPPSSKSHHHPQQMQQMLQQHNHFPALPQQTPPQSHRRSLNN 917
            .     .|:|.||...:..|:....|   .|..||.|....||....|....:..|     :|.:
Zfish   603 G-----GSNSMPSQSRSSVQRTHSLP---VHTSPQTMLLFQQQECQVPGTDLEINP-----TLES 654

  Fly   918 LIL 920
            |.|
Zfish   655 LCL 657

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smgNP_001137924.1 SAM_Smaug 597..655 CDD:188956 36/57 (63%)
SAM 601..656 CDD:197735 34/54 (63%)
PHAT 656..763 CDD:204178 31/151 (21%)
samd4bXP_021322196.1 SAM_Smaug 297..359 CDD:188956 38/80 (48%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D297836at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
11.010

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