DRSC/TRiP Functional Genomics Resources

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Protein Alignment Srp68 and srpa-68

DIOPT Version :9

Sequence 1:NP_648273.1 Gene:Srp68 / 39028 FlyBaseID:FBgn0035947 Length:604 Species:Drosophila melanogaster
Sequence 2:NP_506083.1 Gene:srpa-68 / 179686 WormBaseID:WBGene00010097 Length:622 Species:Caenorhabditis elegans


Alignment Length:643 Identity:200/643 - (31%)
Similarity:326/643 - (50%) Gaps:77/643 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 TGDVQEKTETAPVAEPSKIFTVEILHMIKDAQQQHGLRHGDFQRYRGYCSRRIRRLRKALKYPQG 74
            |.||:.|:||   .|.....||.||.::|||||||||||||:.|||.||:.::.|:|||||:...
 Worm     2 TNDVEMKSET---EELPPFPTVHILQVVKDAQQQHGLRHGDYARYRKYCAAKLERMRKALKFTNS 63

  Fly    75 DKRHFKRRDVTIGQLTGKKA--DERFIHIPLICAERAWAYAM--QLKQESNTE-PRKRFHLVNKL 134
            .....||:...:.:....::  :.:|::..:..:||.:|.||  ::..|.|.| .||:|.::|.|
 Worm    64 HNCQKKRKAKFVKKWLSVESVQNVQFLNFGIFESERRYAEAMIDKITLEDNPEKSRKKFSMINSL 128

  Fly   135 RRACFYALQLQELC-NTEAFDARTKLECEAYVAWMHGTLHFELQLWKTAGEHLKRAQVVYENLGK 198
            |:|..:|..|:::. .:|.|||.||||.:||.|||.|...||.:.|:.|.|.||.|:.|||.|.:
 Worm   129 RKAVLHATNLEKIVQESERFDAPTKLEAQAYAAWMRGMCSFESRNWQKASESLKLAKTVYEKLAE 193

  Fly   199 ALPEDE-QELYRAKVNEFTPNLRYCAYNI--SGGASGGKIDEILELRAQ---GVLENLDVLVSQT 257
            |..... ..:::.:..|..|.||.|.:||  |.||. |.:.|::|||.|   |...::|.|:|:.
 Worm   194 ATNNTTLSSIFKGRCREIQPQLRLCEFNIAESPGAV-GTMTELMELRMQMGEGGDSSVDKLISEM 257

  Fly   258 K-TESSEGLQTIDWRGRKVTVRPEKVRLFLLSAQELDKSLAKTTKQDAKIELIERILMDCKDAIQ 321
            : :.:|..:.||:|.|.|.||..||.:..:...::.:..||:......|:.|.|:...|.:|||.
 Worm   258 RASATSAEVVTIEWGGAKSTVDDEKAKQVVQEWKQTEVELAQCQTPKEKMALFEKATADTRDAID 322

  Fly   322 AVRDEIKQDPKLRSLTTGQTVSGVQYLLAYLSYIRHSRTLQRNLCLVEQAKLNFYDPNLQSQQNV 386
            .:.|.|::.....:.||     .:|.:.|||.:::.:.|..|.|.:::..|              
 Worm   323 RISDIIRRKSSENADTT-----VLQSIKAYLEFLKMNGTASRYLAIIDNTK-------------- 368

  Fly   387 GDGKRVRPQDLARLYEIILQNVTEMQQINGLEDDATYQSEVENLAITFKAFRCYYIALTLIDIKK 451
             ..|:.:||||.|||:.:::...|:.:|.|.:.|.......|.....::||||:|:|.:...:.|
 Worm   369 -SEKKSKPQDLLRLYDSVIEIYKEVAEIPGADHDKNLIQAFEVKVEYYRAFRCFYMASSYSALHK 432

  Fly   452 WKEAVALYERASNYATEA---LKGKSSPEF---QLQEELKKVVSAIDGCKFSAHAYSVLEDDNSE 510
            :.||.||::|..:...:|   ||...|..|   :.|..|.::.|.::..|.:..|..:.......
 Worm   433 YSEAAALFDRTVSRVQDAEGKLKKLKSSSFITNETQSSLNELRSEVESAKVTVRAARLASAAGDV 497

  Fly   511 ESGTTTKSQKTTKPLYERLSLYKE---DQSLHTKAP-NVFKLTPDMEPIPCKPIFFDLAMTYVEL 571
            ::.:........:||.|.::.:::   ..||..|.. .|..|.|...|:|.||||||||..::.:
 Worm   498 KTDSELAKIIDKRPLLETVNEWRQWDVRNSLKDKKTIPVASLPPAFIPMPNKPIFFDLANFHLTM 562

  Fly   572 PSLEGKLE--------SPGK--KGAS------------------ITGFVKGFLG--WG 599
            |:::.:||        :|.|  ||:|                  :||.:.|:..  ||
 Worm   563 PNVDDRLEKLQKDRDATPKKAAKGSSAAAASSKTSNQEEEEQQGLTGMLSGWKKSFWG 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Srp68NP_648273.1 SRP68 46..568 CDD:293574 168/544 (31%)
srpa-68NP_506083.1 SRP68-RBD 35..556 CDD:304552 166/541 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160163849
Domainoid 1 1.000 236 1.000 Domainoid score I1314
eggNOG 1 0.900 - - E1_KOG2460
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H7056
Inparanoid 1 1.050 274 1.000 Inparanoid score I1797
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG54870
OrthoDB 1 1.010 - - D1019762at2759
OrthoFinder 1 1.000 - - FOG0005221
OrthoInspector 1 1.000 - - oto20101
orthoMCL 1 0.900 - - OOG6_102026
Panther 1 1.100 - - LDO PTHR12860
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1392
SonicParanoid 1 1.000 - - X3732
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1615.840

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