DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pix and abce1

DIOPT Version :9

Sequence 1:NP_648272.1 Gene:pix / 39027 FlyBaseID:FBgn0086706 Length:611 Species:Drosophila melanogaster
Sequence 2:NP_001005628.1 Gene:abce1 / 448085 XenbaseID:XB-GENE-993988 Length:599 Species:Xenopus tropicalis


Alignment Length:597 Identity:460/597 - (77%)
Similarity:525/597 - (87%) Gaps:0/597 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 DKQTRIAIVSDDKCKPKRCRQECKKTCPVVRMGKLCIEVTPTSKIASLSEELCIGCGICVKKCPF 75
            ||.||||||:.||||||:|||||||:|||||||||||||||.|||..:||.||||||||:|||||
 Frog     3 DKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIVWISETLCIGCGICIKKCPF 67

  Fly    76 EAITIINLPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLG 140
            .|::|:||||||||.|||||..|:|||||||||||||||||||.|||||||||||||||||||||
 Frog    68 VALSIVNLPSNLEKETTHRYCANAFKLHRLPIPRPGEVLGLVGTNGIGKSTALKILAGKQKPNLG 132

  Fly   141 KYANPPDWTEILSYFRGSELQNYFTKILEDNLKALVKPQYVDQIPKAVRGAVGDLLDKKDERELQ 205
            |:.:||||.|||:|||||||||||||||||:|||::|||||||||||.:|.||.:||:|||.:.|
 Frog   133 KHDDPPDWQEILTYFRGSELQNYFTKILEDDLKAIIKPQYVDQIPKAAKGPVGTILDRKDETKTQ 197

  Fly   206 TKICEMLDLSHIRDREIAQLSGGELQRFAIAMVCIQNADIFMFDEPSSYLDVKQRLNAALTIRSL 270
            ..:|:.|||:|:|||.:..||||||||||.|:||||.|||||||||||||||||||.||:|||||
 Frog   198 KSVCDQLDLTHLRDRNVEDLSGGELQRFACAVVCIQRADIFMFDEPSSYLDVKQRLKAAITIRSL 262

  Fly   271 LHPTKFIIVVEHDLSVLDYLSDFICCLYGVPGCYGVVTMPFSVREGINIFLDGFVPTENMRFRTE 335
            ::|.::|||||||||||||||||||||||||..||||||||||||||||||||:|||||:|||..
 Frog   263 INPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIFLDGYVPTENLRFRDT 327

  Fly   336 SLTFKVSESATEEEIKRMNHYVYPAMVKTLGKFELTVEKGHFSDSEILVLLGENGTGKTTFIRML 400
            ||.|||:|:|.||:||:|..|.||:|.|.||:|:|.:..|.|:||||:|:|||||||||||||||
 Frog   328 SLVFKVAETANEEDIKKMCMYKYPSMRKLLGEFQLRIVAGEFTDSEIMVMLGENGTGKTTFIRML 392

  Fly   401 AGNLQPDGEVELPMLNISYKPQKISPKFQNHVRHLLHDKIRDAYVHPQFIADVMKPMKIEEIMDQ 465
            ||.|:||...|:|:||:||||||||||....||.|||:||||||.||||:.||||||:||.|:||
 Frog   393 AGRLKPDEGGEVPVLNVSYKPQKISPKSSGTVRQLLHEKIRDAYTHPQFVTDVMKPMQIESIIDQ 457

  Fly   466 EVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRYILHAKKTGFVVEHDF 530
            |||:|||||||||||.|||||.|||||||||||||||||||.||:||||:|||||:|.|:|||||
 Frog   458 EVQSLSGGELQRVALTLCLGKAADVYLIDEPSAYLDSEQRLTAARVIKRFILHAKRTAFIVEHDF 522

  Fly   531 IMATYLADRVIVIEGQPSVKTTAFSPQSLLNGMNRFLELLGITFRRDPNNFRPRINKNNSVKDTE 595
            ||||||||||||.:|.||..|.|.|||:||.|||:||..|.|||||||||:||||||.||:||.:
 Frog   523 IMATYLADRVIVFDGIPSKDTVANSPQTLLAGMNKFLSQLEITFRRDPNNYRPRINKMNSIKDVD 587

  Fly   596 QKRSGQFFFLED 607
            ||:||.:|||:|
 Frog   588 QKKSGNYFFLDD 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pixNP_648272.1 Rli1 12..605 CDD:224166 456/592 (77%)
abce1NP_001005628.1 Rli1 4..597 CDD:224166 456/592 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 237 1.000 Domainoid score I2284
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H2205
Inparanoid 1 1.050 891 1.000 Inparanoid score I386
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D184717at33208
OrthoFinder 1 1.000 - - FOG0004228
OrthoInspector 1 1.000 - - oto104695
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X165
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
77.060

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