DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment pix and abce1

DIOPT Version :9

Sequence 1:NP_648272.1 Gene:pix / 39027 FlyBaseID:FBgn0086706 Length:611 Species:Drosophila melanogaster
Sequence 2:NP_998216.2 Gene:abce1 / 406324 ZFINID:ZDB-GENE-040426-1995 Length:599 Species:Danio rerio


Alignment Length:597 Identity:463/597 - (77%)
Similarity:528/597 - (88%) Gaps:0/597 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 DKQTRIAIVSDDKCKPKRCRQECKKTCPVVRMGKLCIEVTPTSKIASLSEELCIGCGICVKKCPF 75
            ||.||||||:.||||||:|||||||:|||||||||||||:|.|||..:||.||||||||:|||||
Zfish     3 DKNTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVSPQSKIVWISESLCIGCGICIKKCPF 67

  Fly    76 EAITIINLPSNLEKHTTHRYSKNSFKLHRLPIPRPGEVLGLVGQNGIGKSTALKILAGKQKPNLG 140
            .|::|:||||||||.|||||..|||||||||||||||||||||.|||||||||||||||||||||
Zfish    68 GALSIVNLPSNLEKETTHRYCANSFKLHRLPIPRPGEVLGLVGTNGIGKSTALKILAGKQKPNLG 132

  Fly   141 KYANPPDWTEILSYFRGSELQNYFTKILEDNLKALVKPQYVDQIPKAVRGAVGDLLDKKDERELQ 205
            ::..||||.|||:|||||||||||||||||:|||:|||||||||||.|:|:||.:|.:||:.:.:
Zfish   133 RFDAPPDWQEILAYFRGSELQNYFTKILEDDLKAIVKPQYVDQIPKTVKGSVGAILSRKDDTKTE 197

  Fly   206 TKICEMLDLSHIRDREIAQLSGGELQRFAIAMVCIQNADIFMFDEPSSYLDVKQRLNAALTIRSL 270
            ..:||.|||.|:|||.:..||||||||||.|:||||.|||||||||||||||||||.||:|||||
Zfish   198 ELVCEQLDLLHLRDRNVEDLSGGELQRFACAVVCIQRADIFMFDEPSSYLDVKQRLRAAITIRSL 262

  Fly   271 LHPTKFIIVVEHDLSVLDYLSDFICCLYGVPGCYGVVTMPFSVREGINIFLDGFVPTENMRFRTE 335
            :.|.::|||||||||||||||||||||||||..||||||||||||||||||||:|||||:|||..
Zfish   263 ISPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVTMPFSVREGINIFLDGYVPTENLRFRET 327

  Fly   336 SLTFKVSESATEEEIKRMNHYVYPAMVKTLGKFELTVEKGHFSDSEILVLLGENGTGKTTFIRML 400
            ||.|||:|:|.|||:|::..|.||.|.|::|:|.||:.:|.|:||||:|:|||||||||||||||
Zfish   328 SLVFKVAETAAEEEVKKLCRYQYPNMKKSMGEFTLTITEGEFTDSEIMVMLGENGTGKTTFIRML 392

  Fly   401 AGNLQPDGEVELPMLNISYKPQKISPKFQNHVRHLLHDKIRDAYVHPQFIADVMKPMKIEEIMDQ 465
            ||.|:|||..::|:||:|||||||||||:..||.||||||||||.||||:.||||||:||.|:||
Zfish   393 AGGLKPDGGGDVPILNVSYKPQKISPKFKGSVRALLHDKIRDAYTHPQFVTDVMKPMQIESIIDQ 457

  Fly   466 EVQNLSGGELQRVALVLCLGKPADVYLIDEPSAYLDSEQRLVAAKVIKRYILHAKKTGFVVEHDF 530
            :||||||||||||||.|||||||||||||||||||||||||:||:||||:|||||||.|||||||
Zfish   458 DVQNLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRLMAARVIKRFILHAKKTAFVVEHDF 522

  Fly   531 IMATYLADRVIVIEGQPSVKTTAFSPQSLLNGMNRFLELLGITFRRDPNNFRPRINKNNSVKDTE 595
            ||||||||||||.:|.||..|.|.:||:||.|||:||..|.||||||||||||||||.||:||.|
Zfish   523 IMATYLADRVIVFDGIPSRTTNANAPQTLLAGMNKFLAQLEITFRRDPNNFRPRINKLNSIKDVE 587

  Fly   596 QKRSGQFFFLED 607
            ||:||.:|||:|
Zfish   588 QKKSGNYFFLDD 599

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pixNP_648272.1 Rli1 12..605 CDD:224166 459/592 (78%)
abce1NP_998216.2 Rli1 4..597 CDD:224166 459/592 (78%)
RLI 6..37 CDD:281988 26/30 (87%)
Fer4 48..71 CDD:278466 16/22 (73%)
ABC_RNaseL_inhibitor_domain1 78..332 CDD:213203 202/253 (80%)
ABC_RNaseL_inhibitor_domain2 348..592 CDD:213204 187/243 (77%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170594738
Domainoid 1 1.000 230 1.000 Domainoid score I2393
eggNOG 1 0.900 - - E1_COG1245
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2205
Inparanoid 1 1.050 958 1.000 Inparanoid score I318
OMA 1 1.010 - - QHG62212
OrthoDB 1 1.010 - - D184717at33208
OrthoFinder 1 1.000 - - FOG0004228
OrthoInspector 1 1.000 - - oto40858
orthoMCL 1 0.900 - - OOG6_101314
Panther 1 1.100 - - LDO PTHR19248
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1993
SonicParanoid 1 1.000 - - X165
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1615.800

Return to query results.
Submit another query.