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Protein Alignment CG5026 and Mtmr6

DIOPT Version :9

Sequence 1:	NP_001163392.1	Gene:	CG5026 / 39026	FlyBaseID:	FBgn0035945	Length:	620	Species:	Drosophila melanogaster
Sequence 2:	NP_001381640.1	Gene:	Mtmr6 / 305935	RGDID:	1305378	Length:	655	Species:	Rattus norvegicus

Alignment Length:	660	Identity:	178/660 - (26%)
Similarity:	287/660 - (43%)	Gaps:	151/660 - (22%)

- Green bases have known domain annotations that are detailed below.

  Fly     7 IKTPKLDGVLLHDPSNAGASGATVGTLCITGHHLL-LSARQETSQELWLLHKNIDCVEKKPSLSQ 70
            |:|.|::.|.|.|..:......| |||.:|..||| :.|.|   :|.|:||.:|..|||....:.
  Rat     4 IRTTKVEQVKLLDRFSTNNKSLT-GTLYLTATHLLFIDAHQ---KETWILHHHIASVEKLALTTS 64

  Fly    71 NIVVGGIITLKCKDLRIISLEIKCGKEFFNVAASLEALSAIQNTELLYPFFYRPMYSILE--DGY 133
                |..:.::||:.||:...:...::..::..||..||.....|.||.|.|.|..:..|  :|:
  Rat    65 ----GCPLVIQCKNFRIVHFIVPRERDCHDIYNSLLQLSKQAKYEDLYAFSYNPKQNDTERLNGW 125

  Fly   134 TMFRPELEFAKLISGVGMGGASSPNVANITICMPSTSTSTLTVGAGIPHPLQNGYAIEALACGVG 198
            .:.....|:.::                                 |:|
  Rat   126 QLIDLAAEYERM---------------------------------GVP----------------- 140

  Fly   199 GVGGGALQSPQASCEWRITNVNRDFSVCATYGATLIVPKAITDEQIVLSAAFRDGGRFPVLSY-R 262
                        :..|::::.||::.||.||...|.||:..:...||.|:.||..||.||||| :
  Rat   141 ------------NANWQLSDANREYKVCETYPRELYVPRTASRPVIVGSSNFRSKGRLPVLSYCQ 193

  Fly   263 HENGATLMRSSQPLSIQGIK-RCRADEAILNLVLGRSRKG----FIVDT---------------- 306
            ....|.:.|.|||||  |.. ||..||.:|. .:.::..|    ::|||
  Rat   194 QGTEAAICRCSQPLS--GFSARCLEDEHLLQ-AISKANPGNRYMYVVDTRPKLRMQSWWDTQKDI 255

  Fly   307 -----------W----------------------GKGKSNTETDLHYSQWKKVNRSIGNVSSPAS 338
                       |                      |||..|.:   :||..:.....|.|:....|
  Rat   256 GRIIVRISSKIWNDEKIRESDEKKRLNAMANRAAGKGYENED---NYSNIRFQFVGIENIHVMRS 317

  Fly   339 ILDSFARLIEACNDLGCSTDKWLSRLENSGWLSLVLNSLNASCVVAQCLDQEGSPVLVHGAKGLD 403
               |..:|:|.....|.|.:.:.|.||:||||..:...|:|:..:|:.:..|.:.||||.:.|.|
  Rat   318 ---SLQKLLEVNGSKGLSVNDFYSGLESSGWLRHIKAVLDAAIFLAKAIVVENASVLVHCSDGWD 379

  Fly   404 STLIVTSLVQIILNPDCRTVRGLQALIEREWIQAGHPFASRHRYSCYTPNQTRNKTSGATFVLFL 468
            .|..|.||..::|:...||::|...|||::||..||.|:.|..:....|     |.....|..||
  Rat   380 RTSQVCSLGSLLLDSYYRTMKGFMVLIEKDWISFGHKFSERCGHLDGDP-----KEVSPVFTQFL 439

  Fly   469 DCIYQLYTQFPCSFEFSTQLLILLFEHSHFSQYGTFLCDSERERNELNVHTRTTSLWSYLNRPDV 533
            :|::.|..|||.:|||:...|:.:.||.|..|:|.||.:.::||.||.:..:|.|||.:|....
  Rat   440 ECVWHLTEQFPQAFEFNEAFLLQIHEHIHSCQFGNFLGNCQKEREELRLKEKTYSLWPFLLADK- 503

  Fly   534 LQTFLNPLYEPNA---NVIWPSVAPISLELWSDLYLRW--VIDQRSSV--TVMSQIQELVTREKE 591
             :.:|||||...:   .|:.|:.|..:.:.|.::|.::  .:..|.||  .:|:..::....|::
  Rat   504 -KKYLNPLYSSKSQRLTVLEPNTASFNFKFWRNMYHQFDRTLHPRQSVLNIIMNMNEQNKQLEED 567

  Fly   592 LRTQALKLRK 601
            ::....|:::
  Rat   568 VKDLEAKIKQ 577

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.