DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5653 and kdm1a

DIOPT Version :9

Sequence 1:NP_648269.1 Gene:CG5653 / 39024 FlyBaseID:FBgn0035943 Length:476 Species:Drosophila melanogaster
Sequence 2:NP_001229924.1 Gene:kdm1a / 558450 ZFINID:ZDB-GENE-030131-7828 Length:833 Species:Danio rerio


Alignment Length:622 Identity:149/622 - (23%)
Similarity:231/622 - (37%) Gaps:219/622 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 RASSRIIIIGAGVSGIAAATRLLQNNFQNVQILEAEDRIGGRINTVYFGDNVIDLGAQWCHG--- 66
            :.:.::|:|||||||:||| |.||:...:|.:||:.||:|||:.|...|:.|.||||....|   
Zfish   250 KKTGKVIVIGAGVSGLAAA-RQLQSFGMDVTVLESRDRVGGRVATFRKGNYVADLGAMVVTGLGG 313

  Fly    67 -------KQQNCVYDMVKDMGILHE----TGDYYSPI------------KRVRSNKEVVPHELAC 108
                   ||.|.....:|....|:|    .|:..:.:            .|:......:.|:|..
Zfish   314 NPMAVVSKQVNMELAKIKQKCPLYEANGQAGERCTSVPKEKDEMVEQEFNRLLEATSYLSHQLDF 378

  Fly   109 RIHDIAVKSMPSGPHPVVGSFGTHLTQ---TFWRKI---ESELPQVNRDVASEALNTFAKHESSI 167
            ...:....|:......|:.....|:..   ..|:||   :.||    :|:.::.:.|..|     
Zfish   379 NFLNNKPVSLGQALEVVIQLQEKHVKDEQIEHWKKIVKTQEEL----KDLLNKMVTTKEK----- 434

  Fly   168 IGADNLFEVSVRE-HIEYHECD-----GDKLLHWGTKGYRRFLRLLMKVSADTPEELGLLEGRIQ 226
                      |:| |.:|.|..     .|....:..|...|.|..|.|      |...|:|.:::
Zfish   435 ----------VKELHQQYKEASEVKPPRDITAEFLVKSKHRDLTALCK------EYDELVEMQVK 483

  Fly   227 LDMKVIKIELACPRKVILRC------------------------------QDGDY---------- 251
            |:.::.::|...|..|.|..                              ||.|:          
Zfish   484 LEERLQELEANPPSDVYLSSRDRQILDWHFANLEFANATPLSTLSLKHWDQDDDFEFTGSHLTVR 548

  Fly   252 -----------------------------------------------FEADHVICTVSLGVLQEQ 269
                                                           ::.|.|:||:.|||:::|
Zfish   549 NGYSCVPVALAEGLDIKLNTAVRQVRYTSSGCEVIAVNTRSTTQTFIYKCDAVLCTLPLGVMKQQ 613

  Fly   270 HEKL-FVPPLPAAKVNAIRSLTLGTVNKLYLEYEK---QPLPD--GWVG--------FFCFWLEE 320
            ...: ||||||..|..||:.:..|.:||:.|.:::   .|..:  |.||        .|.||   
Zfish   614 PPAVQFVPPLPEWKTAAIQRMGFGNLNKVVLCFDRVFWDPSVNLFGHVGSTTASRGELFLFW--- 675

  Fly   321 DLIELRKTEYFWVEGITGVHMITCQPRMLMAWVNGPHGRHMETLSDE-------KVLEGLYWLFR 378
               .|.|..                  :|:|.:.|.....||.:||:       .:|:|:     
Zfish   676 ---NLYKAP------------------ILLALMAGEAAGIMENISDDVIVGRCLAILKGI----- 714

  Fly   379 KFLTFEIPPPKRFVRSSWFSNPNFRGSWSY---------RGVMADERNTGPW--DLESPVLGEDG 432
             |.:..:|.||..|.|.|.::|..|||:||         ..:||.....||.  ....||     
Zfish   715 -FGSSAVPQPKETVVSRWRADPWARGSYSYVAAGSSGNDYDLMAQPITPGPAIPGASQPV----- 773

  Fly   433 HLGLLFAGEASSRNHFSTVHGAVEAGYREADRLIDHY 469
             ..|.||||.:.||:.:|||||:.:|.|||.|:.|.:
Zfish   774 -PRLFFAGEHTIRNYPATVHGALLSGLREAGRIADQF 809

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5653NP_648269.1 NAD_binding_8 12..78 CDD:290186 32/75 (43%)
Amino_oxidase 17..466 CDD:279874 143/605 (24%)
kdm1aNP_001229924.1 SWIRM 151..238 CDD:282311
NAD_binding_8 257..315 CDD:290186 29/58 (50%)
Amino_oxidase 262..805 CDD:279874 142/604 (24%)
SKA2 371..>441 CDD:302619 16/88 (18%)
Prefoldin 393..494 CDD:298833 26/125 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG0685
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
21.810

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