DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5653 and KDM1B

DIOPT Version :10

Sequence 1:NP_648269.1 Gene:CG5653 / 39024 FlyBaseID:FBgn0035943 Length:476 Species:Drosophila melanogaster
Sequence 2:NP_001426046.1 Gene:KDM1B / 221656 HGNCID:21577 Length:832 Species:Homo sapiens


Alignment Length:499 Identity:135/499 - (27%)
Similarity:217/499 - (43%) Gaps:106/499 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 IIIIGAGVSGIAAATRLLQNNFQ-NVQILEAEDRIGGRI-NTVYFGDNVIDLGAQWCHGKQQNCV 72
            :||||||.:|:|||.:|  :||. .|.:|||:||||||: :...|....:..|||..:|...|.|
Human   394 VIIIGAGPAGLAAARQL--HNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCINNPV 456

  Fly    73 YDMVKDMGI-LHETGDYYSPIKRVRSNKEVVPHELACRIHDIAV-KSMPSGPHPVVGSFGTHL-T 134
            ..|.:.:|| :|:.|:....|:.            ..||.|..: |.|..       .|...| .
Human   457 ALMCEQLGISMHKFGERCDLIQE------------GGRITDPTIDKRMDF-------HFNALLDV 502

  Fly   135 QTFWRKIESELPQVN-RDVASEALNTFAK----------------HESSIIGA--DNLFEVSVR- 179
            .:.|||.:::|..|. .:...|....|.|                |.|::..|  .||.:||.| 
Human   503 VSEWRKDKTQLQDVPLGEKIEEIYKAFIKESGIQFSELEGQVLQFHLSNLEYACGSNLHQVSARS 567

  Fly   180 -EHIEYH-ECDGDKLLHWGTKGYRRFLRLLMKVSADTPEELGLLEGRIQLDMKVIKIELAC---- 238
             :|.|:. :..||..|.  |.||...:.             .|.||   ||:::...::.|    
Human   568 WDHNEFFAQFAGDHTLL--TPGYSVIIE-------------KLAEG---LDIQLKSPQVQCIDYS 614

  Fly   239 PRKVILRCQDGDYFEADHVICTVSLGVLQEQHEKLFVPPLPAAKVNAIRSLTLGTVNKLYLEYEK 303
            ..:|.:...||..:.|..|:.||.|.:||:...: |.|||...|:.||.||..|.:.|:.|::. 
Human   615 GDEVQVTTTDGTGYSAQKVLVTVPLALLQKGAIQ-FNPPLSEKKMKAINSLGAGIIEKIALQFP- 677

  Fly   304 QPLPDGWVGFFCFWLEEDLIELRKTEYFW-------VEGITGVHMITCQPR----MLMAWVNGPH 357
                      :.||..    :::..::|.       ..|:..| .....|:    :||:.:.|..
Human   678 ----------YRFWDS----KVQGADFFGHVPPSASKRGLFAV-FYDMDPQKKHSVLMSVIAGEA 727

  Fly   358 GRHMETLSDEKVLEGLYWLFRK-FLTFEIPPPKRFVRSSWFSNPNFRGSWSYRGVMADERNTGPW 421
            ...:.||.|::||:......|: |...|:|.|.::..:.|.::|..:.::|:       ..||..
Human   728 VASVRTLDDKQVLQQCMATLRELFKEQEVPDPTKYFVTRWSTDPWIQMAYSF-------VKTGGS 785

  Fly   422 DLESPVLGEDGHLGLLFAGEASSRNHFSTVHGAVEAGYREADRL 465
            .....::.||....:.|||||::|:...||.||..:|.|||.::
Human   786 GEAYDIIAEDIQGTVFFAGEATNRHFPQTVTGAYLSGVREASKI 829

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5653NP_648269.1 Amino_oxidase 17..466 CDD:396255 129/492 (26%)
KDM1BNP_001426046.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..47
GLYR1-binding. /evidence=ECO:0000269|PubMed:23260659, ECO:0007744|PDB:4GUR, ECO:0007744|PDB:4GUS, ECO:0007744|PDB:4GUT, ECO:0007744|PDB:4GUU 282..301
Histone H3-binding. /evidence=ECO:0000269|PubMed:23260659, ECO:0000269|PubMed:23266887, ECO:0007744|PDB:4FWF, ECO:0007744|PDB:4GUR, ECO:0007744|PDB:4GUS 447..476 8/28 (29%)
Histone H3-binding. /evidence=ECO:0000269|PubMed:23260659, ECO:0000269|PubMed:23266887, ECO:0007744|PDB:4FWF, ECO:0007744|PDB:4GUR, ECO:0007744|PDB:4GUS 496..507 2/10 (20%)
Histone H3-binding. /evidence=ECO:0000269|PubMed:23260659, ECO:0000269|PubMed:23266887, ECO:0007744|PDB:4FWF, ECO:0007744|PDB:4GUR, ECO:0007744|PDB:4GUS 547..581 11/33 (33%)
GLYR1-binding. /evidence=ECO:0000269|PubMed:23260659, ECO:0007744|PDB:4GUR, ECO:0007744|PDB:4GUS, ECO:0007744|PDB:4GUT, ECO:0007744|PDB:4GUU 573..575 0/1 (0%)
GLYR1-binding. /evidence=ECO:0000269|PubMed:23260659, ECO:0007744|PDB:4GUR, ECO:0007744|PDB:4GUS, ECO:0007744|PDB:4GUT, ECO:0007744|PDB:4GUU 808..824 6/15 (40%)
Blue background indicates that the domain is not in the aligned region.

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