DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG5653 and lsd-1

DIOPT Version :10

Sequence 1:NP_648269.1 Gene:CG5653 / 39024 FlyBaseID:FBgn0035943 Length:476 Species:Drosophila melanogaster
Sequence 2:NP_510000.2 Gene:lsd-1 / 181369 WormBaseID:WBGene00011615 Length:737 Species:Caenorhabditis elegans


Alignment Length:585 Identity:127/585 - (21%)
Similarity:224/585 - (38%) Gaps:176/585 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MEKCRASSRIIIIGAGVSGIAAATRLLQNNFQNVQILEAEDRIGGRI------------------ 47
            |||    ..:::||||.:||||||:||...| :|.::||....|||:                  
 Worm   172 MEK----KFVVVIGAGAAGIAAATQLLTFGF-DVAVVEASGLTGGRVRSLISKHGELIETGCDSL 231

  Fly    48 ------------------------NTVYFGD---------NVID-------LG-AQWCHGKQQ-- 69
                                    ||:.|..         :||:       .| |...||.:|  
 Worm   232 RNLDESVITTLLHQVPLNENIMSENTIVFSKGKYVPVARCHVINGLYANLKAGLAHASHGPEQRG 296

  Fly    70 -NCVY-----------DMVKDMGILHETGDYYSPIK-RVRSNKE-------VVPHELACRIHDIA 114
             |.:|           :|::...:|    .||:..| :|..|.|       :..:.|...:.:..
 Worm   297 ENGLYISRQQAYENYFNMIERSTLL----SYYNFAKEKVNLNAERKHLYEVLKTNRLTALLAEQK 357

  Fly   115 VKSMPSGPHPVVGSFGTHLTQTFWRKIESELPQVNR-----DVASEALNTFAK------------ 162
            :|:.|.....::.|...        .||..:.|.:.     ::..|.:....|            
 Worm   358 LKNTPPSDELLLKSLQI--------DIEKAIRQFDEACERFEICEERIADLEKNPRCKQSMHPND 414

  Fly   163 --HESSIIG-ADNLFEVSVREHIEYHECDGD--KLLHWGTKGYRRFLRLLMKVSADTPEELGLLE 222
              |.:.::| .:.||...: |.::: .|:.:  ||.....:......::|:.|:.:.       :
 Worm   415 FIHYNFLLGFEERLFGAQL-EKVQF-SCNVNELKLKSQVARVQEGLAQVLINVANER-------K 470

  Fly   223 GRIQLDMKVIKIELACPRKVILRCQDGD----YFEADHVICTVSLGVLQ-----EQHEKLFVPPL 278
            .:|..:.:||:|:......|||:.:..|    ...||:|:.|:.:|||:     ::...:|.|||
 Worm   471 VKIHHNQRVIEIDTGSSDAVILKLRKPDGSVGILNADYVVSTLPIGVLKKTIIGDERAPVFRPPL 535

  Fly   279 PAAKVNAIRSLTLGTVNKLYLEYEKQPLPDGWVGFFCFWLEE--------DLIELRKTEYFWVEG 335
            |.:|..|||||..|.:||:...:|.:           ||.|.        |.|..|...:.|.. 
 Worm   536 PKSKFAAIRSLGNGLINKIVFVFETR-----------FWPESINQFAIVPDKISERAAMFTWSS- 588

  Fly   336 ITGVHMITCQPRMLMAWVNGPHGRHMETLSD--EKVLEGLYWLFRKFLTFEIPPPKRFVRSSWFS 398
                   ..:.|.|.....|.:..|...:::  .|.||.|..:|:     :.|.|.....::|.:
 Worm   589 -------LPESRTLTTHYVGENRFHDTPVTELITKALEMLKTVFK-----DCPSPIDAYVTNWHT 641

  Fly   399 NPNFRGSWSYRGVMADERNTGPWD-LESPVLGEDGHLGLLFAGEASSRNHFSTVHGAVEAGYREA 462
            :....|:.::..:..:.::   :| |:.|:...||...:.||||.:|.....|:.||..:|.|.|
 Worm   642 DELAFGTGTFMSLRTEPQH---FDALKEPLKTRDGKPRVFFAGEHTSALEHGTLDGAFNSGLRAA 703

  Fly   463  462
             Worm   704  703

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5653NP_648269.1 Amino_oxidase 17..466 CDD:396255 120/569 (21%)
lsd-1NP_510000.2 SWIRM 80..158 CDD:461307
Amino_oxidase 191..706 CDD:396255 115/562 (20%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.