DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ValRS-m and TWN2

DIOPT Version :10

Sequence 1:NP_648268.1 Gene:ValRS-m / 39023 FlyBaseID:FBgn0035942 Length:994 Species:Drosophila melanogaster
Sequence 2:NP_172913.1 Gene:TWN2 / 838023 AraportID:AT1G14610 Length:1108 Species:Arabidopsis thaliana


Alignment Length:1032 Identity:381/1032 - (36%)
Similarity:572/1032 - (55%) Gaps:122/1032 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 STLKDAANELP-------------------LAAGYQPQPVEN---AYWEREHRQANLPKASASSC 70
            |:.:||:.|.|                   :|..|.|..||.   |:||:    ::|.||.|.|.
plant   106 SSKRDASEENPEDFVDPETPLGERKRLSSQMAKQYSPATVEKSWYAWWEK----SDLFKADAKSS 166

  Fly    71 KRGTYRMLLPPPNVTGNLHLGHALMATVQDVIARQREQLGYQVDWVPGTDHAGIATQVVVERTIA 135
            | ..:.::||||||||.||:||||.:.::|.|.|.:...||...||||.||||||||||||:.|.
plant   167 K-PPFVIVLPPPNVTGALHIGHALTSAIEDTIIRWKRMSGYNALWVPGVDHAGIATQVVVEKKIM 230

  Fly   136 ASQAKTRHELGRSAFLDEVWRWKAEKGAGIVQDLRQLGCKLNWQREYFTMDEQQAHAVNVAFERL 200
            ..:..|||::||..|:.|||:||.:.|..|:..||:||..|:|.||.||||||::.||..||.||
plant   231 RDRGMTRHDVGREEFVKEVWKWKNQYGGTILTQLRRLGASLDWSRECFTMDEQRSKAVTEAFVRL 295

  Fly   201 FEEGLIQRRNSVVNWCTALRSAISDIEVDSVEITEPVEISVPGYDHKVLFGRMYDFAYHVVDGEA 265
            ::||||.|...:|||...||:||||:||:.::|.|...:.||||:..|.||.:..|||.:     
plant   296 YKEGLIYRDIRLVNWDCILRTAISDVEVEYIDIKEKTLLKVPGYEKPVEFGLLTSFAYPL----- 355

  Fly   266 LPDGSVEEIVVSTTRPETILGDVAVAVHPLDPRYAKYRNIDQVKLKHPFRDDTIPLVFD-ITVDQ 329
              :|.:.|::|:|||.||:|||.|:|:||.|   |:|:::......|||....:|::.| |.||.
plant   356 --EGGLGEVIVATTRVETMLGDTAIAIHPDD---ARYKHLHGKFAVHPFNGRKLPIICDGILVDP 415

  Fly   330 EFGTGAVKITPAHDKFDFELATRHKLEPRQVFTETGLV-VDAYSEYKGIPRFEARDLIVNRLEEM 393
            .||||.||||||||..|.|:..|||||...:||:.|.: .:..|::.|:|||.||:.:|..|::.
plant   416 NFGTGCVKITPAHDPNDCEVGKRHKLEFINIFTDDGKINTNGGSDFAGMPRFAAREAVVEALQKQ 480

  Fly   394 DLLRQVRSHTMQLPICSRSKDVIEYMILPQWFLKCKDLAKDALSEL---HSGRLQILPPNFETEW 455
            .|.|..:::.|:|.:|||:.||||.||.|||::.|..:.|:||...   .:.:|:.:|..:..||
plant   481 GLYRGAKNNEMRLGLCSRTNDVIEPMIKPQWYVNCSMIGKEALDVAITDENKKLEFVPKQYTAEW 545

  Fly   456 ERWLQDSRDWCISRQLWWGHQVPA-YEVIDSQG-------NSQWVAALDEKTARQKAMRLIGSEE 512
            .|||::.|||||||||||||::|| |..::...       :..||.|..|..||::|.:....::
plant   546 RRWLENIRDWCISRQLWWGHRIPAWYATLEEDQLKEVGAYSDHWVVARTEDDAREEAAQKFLGKK 610

  Fly   513 FTLKRDPDVLDTWFSSSLLPFSTAGWPE--ESYKERYPLDIMQTGHDIIFFWVARMMMLGLKLTG 575
            |.|.||||||||||||.|.|.|..|||:  :.:|..||..:::|||||:|||||||:|:|:||.|
plant   611 FELTRDPDVLDTWFSSGLFPLSVLGWPDVTDDFKAFYPTSVLETGHDILFFWVARMVMMGMKLGG 675

  Fly   576 EAPFQRILLNGIVCDAHGRKMSKSIGNIVAPQQVVQGASLESLKAGLEQSCEAGIITPSELKAST 640
            |.||.::..:.::.||||||||||:||::.|.:|:.|.:||    ||.:..|.|.:.|.|:..:.
plant   676 EVPFSKVYFHPMIRDAHGRKMSKSLGNVIDPLEVINGVTLE----GLHKRLEEGNLDPKEVIVAK 736

  Fly   641 IGMTQMFPNGIQECGTDALRFTLMSHNIKSHFISFDVNACHTNKLFLNKVWQAMRFTLGSAKGLG 705
            .|..:.|||||.|||||||||.|:|:..:|..|:.|:......:.:.||:|.|:||.:   ..||
plant   737 EGQVKDFPNGIPECGTDALRFALVSYTAQSDKINLDILRVVGYRQWCNKLWNAVRFAM---MKLG 798

  Fly   706 ISLHQFETLEGVNLGLWDRWIVGRLAETLSVCSQSYSNYNFHLATAALKTFFYQYLCDTYLETTK 770
            ......:||....:....:||:..|.:.:|....|...:.|..|...:..::....||.|:|..|
plant   799 DGYTPPQTLSPETMPFSCQWILSVLNKAISKTVVSLDAFEFSDAANTIYAWWQYQFCDVYIEAIK 863

  Fly   771 PAIGNRS---ADAYIHV-GTLTACLSWGLQAMAPYAPFVASELLQHVPL--NIELKLS----DY- 824
            |.....:   |....|. ..|...|..||:.:.|:.|||..||.|.:|.  :.|.|.|    || 
plant   864 PYFAGDNPTFASERAHAQHALWISLETGLRLLHPFMPFVTEELWQRLPAPKDTERKASIMICDYP 928

  Fly   825 ------KDEKLEEEVNEIVNICHNVRQVKSRNEISKRHHPQLSLFA--QNTDSEGVLRRHLPQIK 881
                  .:||:|.|::.::.....:|.::: ..:.|:.:.:|..||  :|..:..:::.|..:|:
plant   929 SAIENWSNEKVESEMDTVLATVKCMRALRA-GLLEKQKNERLPAFALCENNVTSEIVKSHELEIR 992

  Fly   882 VLSRCEDVE--------------LELFDESSKISKQLSYFSTAGALCSFGLKLSDGLDLTPEKRD 932
            .|:....:|              :|..:|:.|:     |....||:.:                 
plant   993 TLANLSSLEVVSKGQHAAPPGSSVETVNENLKV-----YLEVDGAINT----------------- 1035

  Fly   933 EMQKANAKKLKKLVTELQRYRMRLDN----EAFQLMADKKVKSHFENKVKELEAEIN 985
               :|..:|::..:.|||:.:.:|..    ..::......:|....||:.::..|.:
plant  1036 ---EAEQEKIRNKIGELQKQKEKLQKMMSVSTYEEKVPANIKEDNANKLAKILQEFD 1089

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ValRS-mNP_648268.1 PTZ00419 23..989 CDD:240411 381/1032 (37%)
TWN2NP_172913.1 PLN02381 41..1106 CDD:215214 381/1032 (37%)

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