DRSC/TRiP Functional Genomics Resources

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Protein Alignment ValRS-m and Vars2

DIOPT Version :9

Sequence 1:NP_001286988.1 Gene:ValRS-m / 39023 FlyBaseID:FBgn0035942 Length:994 Species:Drosophila melanogaster
Sequence 2:NP_780346.3 Gene:Vars2 / 68915 MGIID:1916165 Length:1060 Species:Mus musculus


Alignment Length:999 Identity:383/999 - (38%)
Similarity:536/999 - (53%) Gaps:86/999 - (8%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 KDAANELPLAAGYQPQPVENA---YWERE-----HRQANLPKASASSCKRGTYRMLLPPPNVTGN 87
            ||.:..||.|  |.||.||.|   :|.||     ..||.||:|:..     |:.|.:|||||||:
Mouse    94 KDVSGPLPPA--YSPQYVEAAWYQWWVREGFFKPEYQARLPQATGE-----TFSMCIPPPNVTGS 151

  Fly    88 LHLGHALMATVQDVIARQREQLGYQVDWVPGTDHAGIATQVVVERTIAASQAKTRHELGRSAFLD 152
            ||:||||...:||.:.|.....|.:|.|:||:||||||||.:||:.:...|...||||.|..||.
Mouse   152 LHIGHALTVAIQDALVRWHRMRGDRVLWIPGSDHAGIATQAMVEKQLWKEQRVRRHELSREDFLR 216

  Fly   153 EVWRWKAEKGAGIVQDLRQLGCKLNWQREYFTMDEQQAHAVNVAFERLFEEGLIQRRNSVVNWCT 217
            .||:||.|||..|.:.|..||..|:|.||.||||...:.||..||.||:..||:.|...:|||..
Mouse   217 AVWQWKHEKGGEIYEQLCALGASLDWDRECFTMDAGSSAAVTEAFVRLYNSGLLYRNRQLVNWSC 281

  Fly   218 ALRSAISDIEVDSVEITEPVEISVPGYDHKVLFGRMYDFAYHVVDGEALPDGSVEEIVVSTTRPE 282
            .||||||||||:|..:.....:.:||....|.||.:...|: .||||  ||   .||||.|||||
Mouse   282 TLRSAISDIEVESRPLPGRTVLQLPGCPTPVSFGLLASVAF-PVDGE--PD---TEIVVGTTRPE 340

  Fly   283 TILGDVAVAVHPLDPRYAKYRNIDQVKLKHPFRDDTIPLVFDITVDQEFGTGAVKITPAHDKFDF 347
            |:.|||||||||.||||.   ::...:|:||.....:||:.|.||....||||||:||||...|.
Mouse   341 TLPGDVAVAVHPDDPRYT---HLHGRQLRHPLTGQLLPLITDTTVQPHVGTGAVKVTPAHSPIDA 402

  Fly   348 ELATRHKLEPRQVFTETGLVVDAYSEY-KGIPRFEARDLIVNRLEEMDLLRQVRSHTMQLPICSR 411
            |:.|||.|.|..|..|.|.:.....:: :|:.||.||:.|:..|.|..|.|.::.|.|.||||||
Mouse   403 EIGTRHGLTPLSVIAEDGTMTSLCGDWLQGLHRFVAREKIMCTLREQGLFRGLQEHPMVLPICSR 467

  Fly   412 SKDVIEYMILPQWFLKCKDLAKDALSELHSGRLQILPPNFETEWERWLQDSRDWCISRQLWWGHQ 476
            |.||:||::..|||::|:::...|...:.||.|::.|...:..|:.|.....|||:|||||||||
Mouse   468 SGDVVEYLLKSQWFVRCQEMGDLAAKAVESGALELWPSFHQKSWQHWFAHIGDWCVSRQLWWGHQ 532

  Fly   477 VPAYEVIDSQGNSQ----WVAALDEKTARQKAMRLIG--SEEFTLKRDPDVLDTWFSSSLLPFST 535
            :|||.||.......    ||....|..||..|.:..|  ..|.||:||||||||||||:|.|||.
Mouse   533 IPAYRVIGENAEDDRKECWVVGRSEAEARAVAAKRTGRPEAELTLERDPDVLDTWFSSALFPFSA 597

  Fly   536 AGWPEES--YKERYPLDIMQTGHDIIFFWVARMMMLGLKLTGEAPFQRILLNGIVCDAHGRKMSK 598
            .|||.|:  ....|||.:::||.|::.|||.||:|||.:|||:.||.::||:.:|.|..||||||
Mouse   598 LGWPRETPDLAHFYPLTLLETGSDLLMFWVGRMVMLGTQLTGQLPFSKVLLHSMVRDRQGRKMSK 662

  Fly   599 SIGNIVAPQQVVQGASLESLKAGLEQSCEAGIITPSELKASTIGMTQMFPNGIQECGTDALRFTL 663
            |:||::.|:.::.|..|:.|:|.|..    |.:.|.||..:.....:.||.||.|||||||||.|
Mouse   663 SLGNVLDPRDIISGQELQVLQAKLRD----GNLDPGELAVAAAAQKKDFPYGIPECGTDALRFAL 723

  Fly   664 MSHNIKSHFISFDVNACHTNKLFLNKVWQAMRFTLGSAKGLGISLHQFETLEGVNLGLWDRWIVG 728
            .||.|....:...|:.....:.|.||:|.|:||.|   :.||.:.......|.......|.||:.
Mouse   724 CSHGILGGDLHLSVSEVLNYRHFCNKLWNALRFVL---RALGDNFVPQPAEEVTPSSPMDAWILS 785

  Fly   729 RLAETLSVCSQSYSNYNFHLATAALKTFFYQYLCDTYLETTKPAIGNRSADAYIHVG---TLTAC 790
            |||...|.|.:.:.:....|.|..|..|:...|||.|||..||.:.:.....    |   .|.:|
Mouse   786 RLAFAASECERGFLSRELSLVTHTLYHFWLHNLCDVYLEAVKPVLSSVPRPP----GPPQVLFSC 846

  Fly   791 LSWGLQAMAPYAPFVASELLQHV------PLNIELKLSDY---------KDEKLEEEVNEIVNIC 840
            ...||:.:||..||:|.||.|.:      ||...:.::.|         :..:||...:.:..:.
Mouse   847 ADVGLRLLAPLMPFLAEELWQRLPPRPGGPLAPSICVAPYPSTRSLEFWRQPELERCFSRVQEVV 911

  Fly   841 HNVRQVKSRNEISKRHHPQLSLFAQNTDSEGVLRRHLPQIKVLSRCEDVELELFDESSKISKQLS 905
            ..:|.:::..:::|. .||:.|...:...:|:::..|..:.:||.|..|.               
Mouse   912 QALRALRATYQLTKA-RPQVLLQCSDPGEQGLVQPFLEPLGILSHCGAVG--------------- 960

  Fly   906 YFSTAGALCSFG---LKLSDGLDLTPEKRDEMQKANAKKLKKLVTELQRYRMRLDNEAFQLMADK 967
             |.:.||....|   ..|.|.:.:..|.:..:...:  :|.:|....|:.:.:||:...:.|::.
Mouse   961 -FLSPGAAAPSGWALTPLGDTMKIYMELQGLVDPQS--QLPRLTARRQKLQKQLDDLLNRTMSEG 1022

  Fly   968 KVKSHFENKVKELEAEINSLTRLA 991
            ..:.  :.::..|..|::.|.:.|
Mouse  1023 LAER--QQRISSLHLELSKLDQAA 1044

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ValRS-mNP_001286988.1 PTZ00419 23..989 CDD:240411 382/995 (38%)
ValRS_core 73..675 CDD:185677 286/610 (47%)
tRNA-synt_1_2 268..391 CDD:290334 58/123 (47%)
Anticodon_Ia_Val 675..812 CDD:153416 44/139 (32%)
Vars2NP_780346.3 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 25..50
PTZ00419 90..1018 CDD:240411 378/969 (39%)
ValRS_core 137..735 CDD:185677 286/615 (47%)
'HIGH' region 146..156 7/9 (78%)
'KMSKS' region 659..663 3/3 (100%)
Anticodon_Ia_Val 735..869 CDD:153416 45/140 (32%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0525
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53858
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0001015
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_100292
Panther 1 1.100 - - O PTHR11946
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
65.820

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