DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment ValRS-m and vars2

DIOPT Version :9

Sequence 1:NP_001286988.1 Gene:ValRS-m / 39023 FlyBaseID:FBgn0035942 Length:994 Species:Drosophila melanogaster
Sequence 2:XP_002940996.3 Gene:vars2 / 100493727 XenbaseID:XB-GENE-6046089 Length:1033 Species:Xenopus tropicalis


Alignment Length:1009 Identity:396/1009 - (39%)
Similarity:569/1009 - (56%) Gaps:99/1009 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 KDAANELPLAAGYQPQPVENA---YWERE-----HRQANLPKASASSCKRGTYRMLLPPPNVTGN 87
            ||.:  :||...|.|:.||.|   :|.|:     ..|:..|...:.     ||.:.:|||||||:
 Frog    74 KDIS--VPLPHSYSPRYVEAAWYPWWVRQGFFKPEYQSQQPHNGSE-----TYSLCIPPPNVTGS 131

  Fly    88 LHLGHALMATVQDVIARQREQLGYQVDWVPGTDHAGIATQVVVERTIAASQAKTRHELGRSAFLD 152
            ||:||||...::|.:.|.:..||::|.||||:||||||||.|||:.:...:...||:..|..||.
 Frog   132 LHIGHALTVAIEDSLVRWKRMLGHKVLWVPGSDHAGIATQAVVEKKLLKEKGLLRHDFSREEFLK 196

  Fly   153 EVWRWKAEKGAGIVQDLRQLGCKLNWQREYFTMDEQQAHAVNVAFERLFEEGLIQRRNSVVNWCT 217
            |||:||.|||..|...||.||..|:|.|..||||:..:.||:.||.||..:||:.|...:|||..
 Frog   197 EVWKWKEEKGDIIYHQLRSLGASLDWDRCCFTMDKMFSRAVSEAFVRLHNDGLVYRHLRLVNWSC 261

  Fly   218 ALRSAISDIEVDSVEITEPVEISVPGYDHKVLFGRMYDFAYHVVDGEALPDGSVEEIVVSTTRPE 282
            |||||||||||||.::|....||||||:.|:.||.::.|||       :.:|..:||:|||||||
 Frog   262 ALRSAISDIEVDSRQLTGKTYISVPGYERKIPFGLLFSFAY-------VTEGGDDEIIVSTTRPE 319

  Fly   283 TILGDVAVAVHPLDPRYAKYRNIDQVKLKHPFRDDTIPLVFDITVDQEFGTGAVKITPAHDKFDF 347
            |:|||.||||||.||||.::..   .:|.|||....||:|....|:.:|||||||:||||...||
 Frog   320 TMLGDTAVAVHPNDPRYLRFHG---TRLHHPFTGQLIPVVTHDFVNPDFGTGAVKVTPAHSLADF 381

  Fly   348 ELATRHKLEPRQVFTETGLVVDAYSEY-KGIPRFEARDLIVNRLEEMDLLRQVRSHTMQLPICSR 411
            |:|....|....|..|.||:.:...|: :|:.||:||:.|::.|:|..|.|....|.|.||:|||
 Frog   382 EMAQSLDLPVVSVIGEDGLMTENSGEWIQGVKRFDAREQILSALKEKGLYRGDYEHAMVLPVCSR 446

  Fly   412 SKDVIEYMILPQWFLKCKDLAKDALSELHSGRLQILPPNFETEWERWLQDSRDWCISRQLWWGHQ 476
            |.||||.::..|||:.||.:|:.||..::.|:|:|:|...:..|..||.:..|||:|||||||||
 Frog   447 SGDVIEQLLKRQWFVSCKKMAQKALEAVNVGQLKIIPSFHQKNWNHWLSNISDWCVSRQLWWGHQ 511

  Fly   477 VPAYEVIDSQGNSQ----------WVAALDEKTARQKAMRLI--GSEEFTLKRDPDVLDTWFSSS 529
            :|||.|..|:..|.          ||.|.:|..|::||.:.:  ..::.::|||.|||||||||:
 Frog   512 IPAYHVAVSEAQSDKDIRDEQEEIWVVAHNESEAKKKASKKLRRPEKDLSVKRDEDVLDTWFSSA 576

  Fly   530 LLPFSTAGWPEES--YKERYPLDIMQTGHDIIFFWVARMMMLGLKLTGEAPFQRILLNGIVCDAH 592
            |.||:..||||.:  .|:.||..:::||.|::|||||||:|||..|||:.||:.:.|:.:|.|||
 Frog   577 LFPFAMLGWPENTSDLKDFYPNSLLETGSDLLFFWVARMVMLGEHLTGKLPFKEVFLHSMVRDAH 641

  Fly   593 GRKMSKSIGNIVAPQQVVQGASLESLKAGLEQSCEAGIITPSELKASTIGMTQMFPNGIQECGTD 657
            |||||||:||::.|..|:.|.|||.|:..|:.    |.:.|.|||.:..|:.:.||.||.|||||
 Frog   642 GRKMSKSLGNVIDPLDVITGISLEELQNRLQD----GNLDPRELKVAEAGLLKAFPRGIPECGTD 702

  Fly   658 ALRFTLMSHNIKSHFISFDVNACHTNKLFLNKVWQAMRFTLGSAKGLGISLHQFETLEGVNLGLW 722
            ||||.|.|:.::...|:.||.:....:.|.||:|..::|||.|   ||.|.......|....|..
 Frog   703 ALRFALCSYKVQGDDINLDVPSVLAVRHFCNKIWNGIKFTLSS---LGESFSPIPVEEFKPQGPM 764

  Fly   723 DRWIVGRLAETLSVCSQSYSNYNFHLATAALKTFFYQYLCDTYLETTKPAI-GNRSADAYIHVGT 786
            |||::..|......|.:.:..|..|.||.|::||:.|..||.|:|..||.: |...:||      
 Frog   765 DRWLLDHLRLLTEECERRFQAYELHGATGAIQTFWVQSYCDFYVEAVKPILKGPHGSDA------ 823

  Fly   787 LTACLSWG----LQAMAPYAPFVASELLQHVP---LNIELKL--------SDYKDEKLEEEVNE- 835
             ...|.||    |:.:||:.||:..||.|..|   :|....:        |.....:..|||.: 
 Frog   824 -QQTLYWGAEIVLRLLAPFTPFLCEELWQRFPSASVNCAPSICVAQYPTPSQMAHWRYPEEVQQF 887

  Fly   836 --IVNICHNVRQVKSRNEISKRHHPQLSLFAQNTDSEGVLR---RHLPQIKVLSRCEDVELELFD 895
              :.::...||.::|...::|. .|::.:|....:....|:   .|||   .||....:::.:..
 Frog   888 DFVQSVIRTVRSLRSDYHMTKA-RPEVHIFCSMEEHLNALQSFHSHLP---TLSHSGPIQVHMLQ 948

  Fly   896 ESSKISKQLSYFST--AGALCSFGLKLSDGLDLTPEKRDEMQKANAK--KLKKLVTELQRYRMRL 956
            ::|:..:....::|  ....|...:||...||    ...|:.|.:.|  .|:.....:.:|. ..
 Frog   949 DASQFREDPVGWATEKVSEGCYLRVKLQGLLD----PHTELAKLHKKHQNLQLQFINMSKYE-NG 1008

  Fly   957 DNEAFQLMADKKVKSHFENKVKELEAEINSLTRL 990
            |||      ||.:    :.|:.:::..:.:|.|:
 Frog  1009 DNE------DKSI----QQKISKVQCTMETLQRM 1032

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ValRS-mNP_001286988.1 PTZ00419 23..989 CDD:240411 395/1006 (39%)
ValRS_core 73..675 CDD:185677 297/616 (48%)
tRNA-synt_1_2 268..391 CDD:290334 59/123 (48%)
Anticodon_Ia_Val 675..812 CDD:153416 47/141 (33%)
vars2XP_002940996.3 PTZ00419 57..1033 CDD:240411 396/1009 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D229591at2759
OrthoFinder 1 1.000 - - FOG0001015
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11946
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
33.110

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