DRSC/TRiP Functional Genomics Resources

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Protein Alignment ValRS-m and vars1

DIOPT Version :9

Sequence 1:NP_001286988.1 Gene:ValRS-m / 39023 FlyBaseID:FBgn0035942 Length:994 Species:Drosophila melanogaster
Sequence 2:XP_002939512.3 Gene:vars1 / 100489760 XenbaseID:XB-GENE-487344 Length:1243 Species:Xenopus tropicalis


Alignment Length:1003 Identity:394/1003 - (39%)
Similarity:576/1003 - (57%) Gaps:79/1003 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 KDAANELPLAAGYQPQPVENA---YWEREHRQANLPKASASSCK----RGTYRMLLPPPNVTGNL 88
            ||.:.  |:...|.||.||:|   :||:|  :...|:...||..    :|.:.|.:|||||||:|
 Frog   271 KDVSG--PMPDSYSPQYVESAWYSWWEKE--KFFKPEFGRSSISEPNPKGLFMMCIPPPNVTGSL 331

  Fly    89 HLGHALMATVQDVIARQREQLGYQVDWVPGTDHAGIATQVVVERTIAASQAKTRHELGRSAFLDE 153
            ||||||...:||.:.|.....|....|.||.||||||||||||:.:...:.||||:.||..|::|
 Frog   332 HLGHALTNAIQDCLTRWHRMRGELTLWNPGCDHAGIATQVVVEKKLWRERGKTRHDFGRENFIEE 396

  Fly   154 VWRWKAEKGAGIVQDLRQLGCKLNWQREYFTMDEQQAHAVNVAFERLFEEGLIQRRNSVVNWCTA 218
            ||:||.|||..|...||.||..|:|.|..||||.:.:.||..||.||.|.|:|.|...:|||...
 Frog   397 VWKWKREKGDRIYHQLRILGSSLDWDRTCFTMDPKLSFAVQEAFIRLHEAGIIYRSKRLVNWSCT 461

  Fly   219 LRSAISDIEVDSVEITEPVEISVPGYDHKVLFGRMYDFAYHVVDGEALPDGSVEEIVVSTTRPET 283
            |.|||||||||..|::....:.||||...|.||.:..|||.|.:       :.|||||:|||.||
 Frog   462 LNSAISDIEVDKKELSGRTLLPVPGYKQGVEFGVLVSFAYKVQE-------TGEEIVVATTRVET 519

  Fly   284 ILGDVAVAVHPLDPRYAKYRNIDQVKLKHPFRDDTIPLVFDITVDQEFGTGAVKITPAHDKFDFE 348
            :|||.||||||.|.|   |:::....:.|||....:|:|||..||..|||||||||||||..|:|
 Frog   520 MLGDTAVAVHPQDQR---YKHLKGHHVLHPFCSRLLPIVFDEFVDMSFGTGAVKITPAHDPTDYE 581

  Fly   349 LATRHKLEPRQVFTETGLVVDAYSEYKGIPRFEARDLIVNRLEEMDLLRQVRSHTMQLPICSRSK 413
            :..||.|:...:..:.|.:::....:.|:.||:||..:::.|:|..|.::|:.:.|.:|:|||||
 Frog   582 VGMRHSLDFVNIMDDNGTLINVPQPFLGMKRFDARKAVLDALKEKGLFKEVKDNPMVVPVCSRSK 646

  Fly   414 DVIEYMILPQWFLKCKDLAKDALSELHSGRLQILPPNFETE-WERWLQDSRDWCISRQLWWGHQV 477
            |::|.::.|||:::|.::.|.|...:..|.| ::.|.|.|: |..|:.:.|||||||||||||::
 Frog   647 DIVEPLLKPQWYVRCDEMGKRAADAVRDGHL-LIKPEFHTKTWFIWMDNIRDWCISRQLWWGHRI 710

  Fly   478 PAYEVI----------DSQGNSQWVAALDEKTARQKAMRL--IGSEEFTLKRDPDVLDTWFSSSL 530
            |||.|.          |:.| ..|::...|:.|::||.|:  :..|:.:|::|.|||||||||.:
 Frog   711 PAYFVTVNDPSVPAGEDTDG-KYWISGRSEQEAKEKAARVFNVAPEKISLRQDDDVLDTWFSSGI 774

  Fly   531 LPFSTAGWPE--ESYKERYPLDIMQTGHDIIFFWVARMMMLGLKLTGEAPFQRILLNGIVCDAHG 593
            .|||..|||.  |.....||..:::|||||:|||||||:||||.|||:.||:.:.|:.:|.||||
 Frog   775 FPFSIFGWPNQTEDLNVFYPGTLLETGHDILFFWVARMVMLGLTLTGKLPFKEVYLHAVVRDAHG 839

  Fly   594 RKMSKSIGNIVAPQQVVQGASLESLKAGLEQSCEAGIITPSELKASTIGMTQMFPNGIQECGTDA 658
            ||||||:||::.|..|:.|.:||.|...|.:|    .:.|:||:.:..|....:||||.||||||
 Frog   840 RKMSKSLGNVIDPLDVINGITLEGLNKQLLES----NLDPAELERAKDGQKSDYPNGIPECGTDA 900

  Fly   659 LRFTLMSHNIKSHFISFDVNACHTNKLFLNKVWQAMRFTLGSAKGLG--ISLHQFETLEGVNLGL 721
            |||.|.::..:...|:.|||.....:.|.||:|.|.:|.:   ||||  .|...|....|.. .|
 Frog   901 LRFALCAYTSQGRDINLDVNRILGYRHFCNKIWNATKFAM---KGLGDNYSPPDFAGACGQE-SL 961

  Fly   722 WDRWIVGRLAETLSVCSQSYSNYNFHLATAALKTFFYQYLCDTYLETTKPAIGNRSADAYIHVG- 785
            .||||:.||:..:.:|:..:.||:|...|.|:..|:...|||.|||..||...: |.:|.|.|| 
 Frog   962 ADRWILSRLSFAVDLCNNGFQNYDFPGITTAVYNFWLYELCDVYLECLKPVFLS-SDEAAISVGR 1025

  Fly   786 -TLTACLSWGLQAMAPYAPFVASELLQHVP---------LNI----ELKLSDYKDEKLEEEVNEI 836
             ||..||..||:.::|:.||:..||.|.:|         :::    |....:::||::|..::..
 Frog  1026 NTLYTCLDAGLRLLSPFMPFLTEELYQRLPRRSSSRTPSISVTSYPETSECNWRDEEIERNMDLA 1090

  Fly   837 VNICHNVRQVKSRNEISKRHHPQLSLF--AQNTDSEGVLRRHLPQIKVLSRCED-VELELFDESS 898
            :.|..::|.:::...::|   .:...|  .|:.|:..|:..:...|.|||.... |.|:..|.:.
 Frog  1091 LLIVKSIRSLRADYNLTK---TKADCFVQCQDADTVSVVTAYTSFITVLSSSRSLVTLKAQDPAP 1152

  Fly   899 KISKQLSYFSTAGALCSFGLKLSDGLDLTPEKRDEMQKANAKKLKKLVTELQRYRMRLDNEAFQL 963
            ..|.    .:||....:..:.|...:|:  ||  |:.|...|| .:|..:|::.|.|:.:..::.
 Frog  1153 AGSA----VNTASDKATVYVVLKGLIDV--EK--ELAKLQVKK-TELGRQLEKLRERMGSADYRS 1208

  Fly   964 MADKKVKSHFENKVKELEAEINSLTRLA 991
            ...:.|:.....::::.|.|...:...|
 Frog  1209 KVPETVQQQDAERIRQTETEFKKVNEAA 1236

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
ValRS-mNP_001286988.1 PTZ00419 23..989 CDD:240411 393/999 (39%)
ValRS_core 73..675 CDD:185677 286/616 (46%)
tRNA-synt_1_2 268..391 CDD:290334 55/122 (45%)
Anticodon_Ia_Val 675..812 CDD:153416 54/140 (39%)
vars1XP_002939512.3 GST_C_family 79..192 CDD:413470
PTZ00419 263..1242 CDD:240411 394/1003 (39%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53858
OrthoDB 1 1.010 - - D229591at2759
OrthoFinder 1 1.000 - - FOG0001015
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11946
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.030

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