DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment GNBP3 and XTH30

DIOPT Version :10

Sequence 1:NP_523986.2 Gene:GNBP3 / 39020 FlyBaseID:FBgn0040321 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_174496.1 Gene:XTH30 / 840109 AraportID:AT1G32170 Length:343 Species:Arabidopsis thaliana


Alignment Length:270 Identity:55/270 - (20%)
Similarity:91/270 - (33%) Gaps:87/270 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly   216 LCLANGHVVLSTNTMKKQFKKGSGESLDLGEKCTGQANTHDCVRNGRTLNDGLPPMVTAQFSSKD 280
            |||.:.....:.||:..:      |||   ....|.||   .||:...|:..|   :..:::...
plant    16 LCLRSSSAFTNLNTLSFE------ESL---SPLFGDAN---LVRSPDDLSVRL---LLDRYTGSG 65

  Fly   281 F----SFKYGRVEVRAKMPRAQWVTPQIWLQPRRPIYGVDDYRSGQLRIAYTRPNG--------- 332
            |    .:::|......|:|.                    ||.:|.: :|:...||         
plant    66 FISSNMYQHGFYSSMIKLPA--------------------DYTAGVV-VAFYTSNGDVFEKTHDE 109

  Fly   333 ------GNLDLYGAAVLFADEPLRSVKNCLKPGTGNNSED-----WSD---SFHNYTLEWTPREL 383
                  ||:         ..:|.|...|....|:.:...:     |.|   .||.|::.|||.::
plant   110 LDIEFLGNI---------KGKPWRFQTNLYGNGSTHRGREERYRLWFDPSKEFHRYSILWTPHKI 165

  Fly   384 RWLVDG---KEWCVQGSAKGS---------FSETTAAGKSLPQAQKLEEGTGLAPFDQEF--YLT 434
            .:.||.   :| .::..|.|:         ::....|........|.:.....|||..||  :..
plant   166 IFWVDDVPIRE-VIRNDAMGADYPAKPMALYATIWDASDWATSGGKYKANYKFAPFVAEFKSFSL 229

  Fly   435 FGLSVGGFNE 444
            .|.||....|
plant   230 DGCSVDPIQE 239

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP3NP_523986.2 CBM39 27..132 CDD:464924
GH16_beta_GRP 175..489 CDD:185688 55/270 (20%)
XTH30NP_174496.1 GH16_XET 28..293 CDD:185685 52/258 (20%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.