DRSC/TRiP Functional Genomics Resources

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Protein Alignment GNBP3 and XTH33

DIOPT Version :9

Sequence 1:NP_523986.2 Gene:GNBP3 / 39020 FlyBaseID:FBgn0040321 Length:490 Species:Drosophila melanogaster
Sequence 2:NP_172525.1 Gene:XTH33 / 837596 AraportID:AT1G10550 Length:310 Species:Arabidopsis thaliana


Alignment Length:235 Identity:46/235 - (19%)
Similarity:70/235 - (29%) Gaps:85/235 - (36%)


- Green bases have known domain annotations that are detailed below.


  Fly   215 TLCLANGH----VVLSTNTMKKQFKK---GSGESLDLGEKCTGQANTHDCVRNGRTLNDGLPPMV 272
            :|.|.:.|    ...:...:..||.|   .:|.|...|        .|:...||......|....
plant    15 SLSLVSSHSRKFTTPNVTRLTDQFSKIAIENGFSRRFG--------AHNIQVNGSLAKLTLDKSS 71

  Fly   273 TAQFSSKDFSFKYGRVEVRAKMPR--AQWVTPQIWLQPRRPIYGVDDYRSGQLRIAYTRPNGGNL 335
            .|...||: .:.||....|.|:|.  |..|....:|.      ..:.|......|        ::
plant    72 GAGLVSKN-KYHYGFFSARLKLPAGFASGVVVAFYLS------NAETYPKSHDEI--------DI 121

  Fly   336 DLYGAA---------VLFADEPLRSVKNCLKPGTGNNSE-----DWSDSFHNYTLEWTPRELRWL 386
            :|.|.:         .::|:...|         ||...:     |.:.:||:|||.|......:|
plant   122 ELLGRSRRDDWTIQTNVYANGSTR---------TGREEKFYFWFDPTQAFHDYTLIWNSHHTVFL 177

  Fly   387 V------------------------------DGKEWCVQG 396
            |                              ||.||..:|
plant   178 VDNIPVRQFPNRGAFTSAYPSKPMSLYVTVWDGSEWATKG 217

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
GNBP3NP_523986.2 CBM39 27..132 CDD:292510
GH16_beta_GRP 175..489 CDD:185688 46/235 (20%)
XTH33NP_172525.1 PLN03161 38..309 CDD:178706 42/212 (20%)
GH16_XET 38..309 CDD:185685 42/212 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG2273
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1209387at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.910

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